GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000366-TA|BGIBMGA000366-PA|IPR006544|P-type ATPase of
unknown pump specificity (type V), IPR001757|ATPase, P-type,
K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter, IPR008250|E1-E2
ATPase-associated region, IPR000150|Cof protein, IPR006069|ATPase,
P-type cation exchange, alpha subunit
         (1088 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    26   1.9  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    24   5.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    24   5.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   7.7  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 10/40 (25%), Positives = 23/40 (57%)

Query: 698 AVPQANDAQPPLTMEVVGESGPPKLPMDSYVIALEGKTWQ 737
           AV   N+ +     +VV ++GP   P+ +  + ++G+T++
Sbjct: 37  AVCALNELKSGAVYKVVDQTGPTHAPIFTIAVQIDGQTYE 76


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 331 QTRFYGNNQVLAKVVR----TGFYTAKGELIKSILYPKEVNFQFYDDA 374
           +  F G    L K+ +    TG Y   G  ++ I+  +   F FYD A
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTA 200


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 331 QTRFYGNNQVLAKVVR----TGFYTAKGELIKSILYPKEVNFQFYDDA 374
           +  F G    L K+ +    TG Y   G  ++ I+  +   F FYD A
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTA 200


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 7.7
 Identities = 9/17 (52%), Positives = 14/17 (82%)

Query: 83   SDGLFYLAQIDEMDLNL 99
            S GLF L++ID +D++L
Sbjct: 1353 SQGLFSLSEIDNLDVSL 1369


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.137    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 304,312
Number of Sequences: 429
Number of extensions: 13046
Number of successful extensions: 33
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 5
length of query: 1088
length of database: 140,377
effective HSP length: 65
effective length of query: 1023
effective length of database: 112,492
effective search space: 115079316
effective search space used: 115079316
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 49 (23.8 bits)