Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000365-TA|BGIBMGA000365-PA|IPR013753|Ras,
IPR002078|Sigma-54 factor, interaction region, IPR003579|Ras small
GTPase, Rab type, IPR001806|Ras GTPase
(181 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 63 3e-11
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 59 3e-10
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 58 6e-10
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 56 2e-09
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 54 1e-08
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 52 4e-08
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 52 5e-08
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 49 4e-07
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 44 1e-05
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 43 2e-05
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 42 7e-05
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 40 2e-04
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 40 2e-04
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 36 0.004
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 36 0.004
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 36 0.005
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 35 0.008
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 33 0.019
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 33 0.019
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 30 0.23
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 29 0.30
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo... 29 0.40
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 29 0.40
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 28 0.70
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma... 28 0.93
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 28 0.93
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 27 1.2
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 27 1.6
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 27 2.1
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 27 2.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 2.8
SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr 2||... 26 2.8
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 25 5.0
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac... 25 5.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 5.0
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 25 5.0
SPAC4C5.01 |||haloacid dehalogenase-like hydrolase |Schizosaccha... 25 6.6
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 25 6.6
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory... 25 8.7
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 25 8.7
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 25 8.7
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 8.7
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 62.9 bits (146), Expect = 3e-11
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 12/167 (7%)
Query: 8 KVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWDV 67
K++++GDSGVGK+ L A + S T+G +++ + EG T +++WD
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFEL-EG----KTVKLQIWDT 64
Query: 68 GGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNLQKWLAEILNQDSSNPTLQHVDVDPE 127
G R +Y+ HGII+V+D+T++ S N+++WL EI + + + V +
Sbjct: 65 AGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEI--DRYAVEGVNRLLVGNK 122
Query: 128 QFLGSTQVIERRYYSRVSPFSDKRRIPPYIMATSTPLSNNRPSQYMS 174
+ +V+E YS F+D IP + TS S N +++
Sbjct: 123 SDMVDKKVVE---YSVAKEFADSLNIP--FLETSAKDSTNVEQAFLT 164
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 59.3 bits (137), Expect = 3e-10
Identities = 29/111 (26%), Positives = 62/111 (55%), Gaps = 7/111 (6%)
Query: 7 VKVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYK-EGTQAQNTFFVELW 65
+K++++GDSGVGK+ L L+ ++ +P + ++ K+ + +G + + +++W
Sbjct: 10 IKLLLIGDSGVGKSCL--LLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIK----LQIW 63
Query: 66 DVGGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNLQKWLAEILNQDSSN 116
D G R +Y+ GI+L++D+T++KS N++ W + + S N
Sbjct: 64 DTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASEN 114
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 58.4 bits (135), Expect = 6e-10
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 7 VKVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWD 66
VK+V+ G SG GK+ L N+ TVG ++ G Q Q +++WD
Sbjct: 10 VKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQ-QKRIKLQIWD 68
Query: 67 VGGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNLQKWLAEI 109
G R+ +Y+ G +LV+D+TN+ S L WL++I
Sbjct: 69 TAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDI 111
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 56.4 bits (130), Expect = 2e-09
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 7 VKVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWD 66
+KV++LG+SGVGKTS+ + + K T+G K E ++LWD
Sbjct: 9 LKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTK-----EVLVDDKVVTLQLWD 63
Query: 67 VGGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNLQKWLAEILNQDS-SNP 117
G ++ FY+ +LV+D+ N KS L W E L Q S SNP
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNP 115
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 54.0 bits (124), Expect = 1e-08
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 8 KVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWDV 67
K V++GDSGVGK++L N+ + T+G VE ++WD
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIG--VEFATRNI---VLDNKKIKAQIWDT 66
Query: 68 GGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNLQKWLAEILNQDSSN 116
G +R +Y+ G ++V+D+T + S N+ +WL E+ SN
Sbjct: 67 AGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSN 115
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 52.4 bits (120), Expect = 4e-08
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 7 VKVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWD 66
+KVV+LGDSGVGKT L + + K T+G K + ++LWD
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTK-----DVVVDDKLVTLQLWD 63
Query: 67 VGGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNLQKWLAEILNQDSSN 116
G ++ FY+ ++V+++ N KS +++ W E L Q S +
Sbjct: 64 TAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQD 113
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 52.0 bits (119), Expect = 5e-08
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 3 AIEKVKVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFV 62
++ K K+V LG+ VGKTSL +++ + T+G K Y E T +
Sbjct: 8 SLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKT-MYLE----DRTVRL 62
Query: 63 ELWDVGGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNLQKWLAEI 109
+LWD G R+ + + + I+V+D+TN S VN +KW+ ++
Sbjct: 63 QLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDV 109
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 49.2 bits (112), Expect = 4e-07
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 8 KVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWDV 67
K+V+LGDS VGK+SL ++ T+G + + E T + +E+WD
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVK----LEIWDT 71
Query: 68 GGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNLQKWLAEILNQ 112
G +++ ++Y+ + I+V+D+T S + W+ E+ Q
Sbjct: 72 AGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQ 116
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 44.0 bits (99), Expect = 1e-05
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 8 KVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHK-YKEGTQAQNTFFVELWD 66
K+V+LGD GKTSL ++ P E +H + +G N+ + LWD
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKG---YFPQVYEPTIFENYIHDIFVDG----NSIELSLWD 67
Query: 67 VGGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVN-LQKWLAEI 109
G + R + Y TH I++ + +R S N + KWL E+
Sbjct: 68 TAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEV 111
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 43.2 bits (97), Expect = 2e-05
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 1 MAAIEKVKVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTF 60
MA + K+V++GD GKT L LI + S G V Y +
Sbjct: 1 MATELRRKLVIVGDGACGKTCL--LI-----VFSKGTFPEVYVPTVFENYVADVEVDGRH 53
Query: 61 F-VELWDVGGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNLQ-KWLAEILNQDSSNPT 118
+ LWD G + R + Y +H I++ + + S N+Q KW++E+L+ SS P
Sbjct: 54 VELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPI 113
Query: 119 L 119
L
Sbjct: 114 L 114
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 41.5 bits (93), Expect = 7e-05
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 9/114 (7%)
Query: 8 KVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFF-VELWD 66
K+V++GD GKT L LI + S G V Y + + LWD
Sbjct: 8 KLVIVGDGACGKTCL--LI-----VFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWD 60
Query: 67 VGGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNLQ-KWLAEILNQDSSNPTL 119
G + R + Y +H +++ + +S N+Q KW++E+L+ S+ P L
Sbjct: 61 TAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPIL 114
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 39.9 bits (89), Expect = 2e-04
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 6 KVKVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELW 65
+++++++G GKT++ + + + I++ T+G +VE + +N F +W
Sbjct: 17 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET--------VEYRNISFT-VW 66
Query: 66 DVGGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNLQKWLAEILNQDSSNPTL 119
DVGG + R ++Q T GII V D +R+ + L +LN+D L
Sbjct: 67 DVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDAL 120
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 39.9 bits (89), Expect = 2e-04
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 4 IEKVKVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVE 63
+ + K+VV+GD GVGK++LT + + + T+ S K EG ++
Sbjct: 6 LREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGA------LLD 59
Query: 64 LWDVGGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNLQKWLAEIL 110
+ D G + R+ + + G +LV+++T+R S + + +IL
Sbjct: 60 VLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQIL 106
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 35.9 bits (79), Expect = 0.004
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 8 KVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWDV 67
K+V++GD G GKT T + H + VEV H T F +WD
Sbjct: 11 KLVLVGDGGTGKT--TFVKRHLTGEFEKKYIATLGVEV--HPLHFHTNFGEICF-NVWDT 65
Query: 68 GGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNLQKWLAEIL 110
G RD +Y I++ D+T+R + N+ W +++
Sbjct: 66 AGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLV 108
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 35.9 bits (79), Expect = 0.004
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 1 MAAIEKVKVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTF 60
MA I+ ++ VLG VGK+SLT N + S T+ + + KYK G + F
Sbjct: 1 MAPIKSRRIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNI-KYK-GQE----F 54
Query: 61 FVELWDVGGSNGHRNTRDVFYQPTHGIILVHDLTNRKS 98
E+ D G + + HG +LV+ +T++ S
Sbjct: 55 ATEIIDTAGQDEYSILNSKHSIGIHGYVLVYSITSKSS 92
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 35.5 bits (78), Expect = 0.005
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 7 VKVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWD 66
+KV ++GDS +GKTSL T+G + K + + TF +WD
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIR---NTEITF--SIWD 65
Query: 67 VGGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNLQKW 105
+GG N + I+ + DL+ + + ++++W
Sbjct: 66 LGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEW 104
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 34.7 bits (76), Expect = 0.008
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 10/88 (11%)
Query: 5 EKVKVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVEL 64
+++++++LG GKT++ + + N+ +++ TVG +VE +K N F +
Sbjct: 20 KEMRILMLGLDAAGKTTILYKLKLNQSVVTIP-TVGFNVETVTYK--------NIKF-NV 69
Query: 65 WDVGGSNGHRNTRDVFYQPTHGIILVHD 92
WDVGG + R ++ T G+I V D
Sbjct: 70 WDVGGQDKIRPLWRHYFTGTKGLIFVVD 97
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 33.5 bits (73), Expect = 0.019
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 8 KVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKY-KEGTQAQNTFFVE--L 64
K+VV+GD G GKT L LI + S G V Y + T N+ +E L
Sbjct: 16 KLVVVGDGGCGKTCL--LI-----VFSSGTFPERYVPTVFENYITDITYGPNSKVIELAL 68
Query: 65 WDVGGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNL-QKWLAEI 109
WD G + R + Y ++ I+L + S N+ +KW E+
Sbjct: 69 WDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEV 114
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 33.5 bits (73), Expect = 0.019
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 8 KVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQ-NTFFVELWD 66
K+VV+GD GKTSL + + G+ V Y + + + LWD
Sbjct: 10 KLVVVGDGACGKTSLL-------SVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWD 62
Query: 67 VGGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNLQ-KWLAEI 109
G + R + Y H I++ + + S N+ KW+ EI
Sbjct: 63 TAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEI 106
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 29.9 bits (64), Expect = 0.23
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 7/114 (6%)
Query: 7 VKVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWD 66
+K VV+GD VGKT L NK TV + V + + + L+D
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTV------MIGDEPYTLGLFD 57
Query: 67 VGGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNL-QKWLAEILNQDSSNPTL 119
G + R + Y T ++ +T+ S N+ +KW E+ + P L
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVPCL 111
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 29.5 bits (63), Expect = 0.30
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 6 KVKVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELW 65
+V+V++LG GKT++ + N+ + T G + + + F +W
Sbjct: 16 EVRVLLLGLDNAGKTTILKCLL-NEDVNEVSPTFGFQIRT--------LEVEGLRFT-IW 65
Query: 66 DVGGSNGHRNTRDVFYQPTHGIILVHDLTNRKSQVNLQKWLAEILNQD 113
D+GG RN +++ T II V D + + L E+L ++
Sbjct: 66 DIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEE 113
>SPAC23G3.05c |||regulator of G-protein signaling
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 343
Score = 29.1 bits (62), Expect = 0.40
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 81 YQPTHGIILVHDLTNRK----SQVNLQK----WLAEILNQDSSNPTLQHVDVDPEQFLGS 132
Y P G +L+ +L+N + S + L K +L +L + + T + + EQ
Sbjct: 98 YWPNFGPLLLEELSNEQTINSSDLLLSKDRAAYLKNLLTSNIQSLTQESTVISKEQVKMF 157
Query: 133 TQVIERRYYSRVSPFSDKRRIPPYIM 158
TQ+I +Y++ SP + +PP ++
Sbjct: 158 TQIIIEKYFNPASP--HEVMLPPQLV 181
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 29.1 bits (62), Expect = 0.40
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 4 IEKVKVVVLGDSGVGKTSLTHLIAHNKPILS 34
+++V+VV+ GD GVGK+SL + + S
Sbjct: 1 MKEVRVVICGDQGVGKSSLISALIQEDNVTS 31
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 28.3 bits (60), Expect = 0.70
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 7 VKVVVLGDSGVGKTSLTHLIAHNK-PILSP 35
+ V +LG S GK+SL +L+A+ + I+SP
Sbjct: 240 INVAILGPSNAGKSSLINLLANRRISIVSP 269
>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 318
Score = 27.9 bits (59), Expect = 0.93
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 73 HRNTRDVFYQPTHGIILVHDLTNRKSQ-VNLQKWLAEILNQDSSNPTLQHVDVDPEQFL 130
H++ DV P I L HD+ + + V + A +LNQ S TL++VD + L
Sbjct: 160 HKHGVDVLMNPAPAIPLSHDMISYCAYLVPNEHEAAILLNQADSPATLENVDAYASKLL 218
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 27.9 bits (59), Expect = 0.93
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 5 EKVKVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCS-VEVKLHK 49
E ++V G+SG GKT T I ++ TVG S VE ++ K
Sbjct: 162 ENQSILVTGESGAGKTENTKRIIQYLAAIASSTTVGSSQVEEQIIK 207
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 5 EKVKVVVLGDSGVGKTSLTHLIAH 28
+K +++ G +G GKT+L H+IAH
Sbjct: 415 DKRIMMLTGLAGAGKTTLAHVIAH 438
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 27.1 bits (57), Expect = 1.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 9 VVVLGDSGVGKTSLTHLIAHNKP 31
+ + GD G GKT+L L HN P
Sbjct: 121 IYLYGDVGCGKTALMDLFYHNLP 143
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 26.6 bits (56), Expect = 2.1
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 102 LQKWLAEILNQDSSNPTLQHVDVDPEQFLGSTQVIERRYYSRVSPFSDKRRI 153
L+KW E ++ ++ P+ + V PE L Q E + S ++P K ++
Sbjct: 17 LKKWEHEYVHTNNCKPSKEDVKKQPEIALLYKQYYELKRESSITPKKAKTKV 68
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 2.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 93 LTNRKSQVNLQKWLAEILNQDSSNPTLQHVDVDPEQFLGST 133
L NR Q +L +W E +D S P++ + +L +T
Sbjct: 24 LQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYSYLDNT 64
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 2.8
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 96 RKSQVNLQKWLAEILNQDSSNPTLQHVDVDPEQFLGSTQV--IERRYYSRVSPFSDKRRI 153
+K+ +L KW + +D+ ++ + D +F + V ++R+ + + ++
Sbjct: 379 QKAIDSLLKWRNRHV-RDALQLLIKEHNADARRFRSGSDVNNVDRKCVKKQMNYREESHT 437
Query: 154 PP--YIMATSTPLSNNRPS 170
P TSTP+SNNRP+
Sbjct: 438 PHGNTTRKTSTPVSNNRPT 456
>SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 85
Score = 26.2 bits (55), Expect = 2.8
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 90 VHDLTNRKSQV--NLQKWLAEILNQDSSNPTLQHVDV 124
VH L +K Q+ +LQ LA++ N+D+ +H+D+
Sbjct: 10 VHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDL 46
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 25.4 bits (53), Expect = 5.0
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 8 KVVVLGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWDV 67
K++ LG GKT+L H++ +++ + ++ LH E N F +D+
Sbjct: 22 KMLFLGLDNAGKTTLLHMLKNDRLAV---------MQPTLHPTSEELAIGNVRFT-TFDL 71
Query: 68 GGSNGHRNTRDVFYQPTHGIILVHD 92
GG R ++ +GI+ + D
Sbjct: 72 GGHQQARRLWRDYFPEVNGIVYLVD 96
>SPAC16C9.02c |||S-methyl-5-thioadenosine
phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 5.0
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 85 HGIILVHDLTNRKSQVNLQ--KWLAEILNQDSSNPTLQHVDVDPEQFLGSTQVIERRYYS 142
HG+ ++ T S+ N+ K L + S D+ PE F+ TQ+I+R +
Sbjct: 60 HGVGHIYTPTEVPSRANIAALKSLGVLAIVSFSAVGSLREDIPPEDFVLPTQIIDRTLCA 119
Query: 143 RVSPF 147
R + F
Sbjct: 120 RPNTF 124
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 5.0
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 4 IEKVKVVVLGDSGVGKTSLTHLIA 27
+ K V+++GD+G GKT++ ++A
Sbjct: 1184 LAKEPVLLVGDTGCGKTTVCQILA 1207
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 25.4 bits (53), Expect = 5.0
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 12 LGDSGVGKTSLTHLIAHNKPILSPGWTVGCSVE 44
L +S +++L H+ N P +P W C +E
Sbjct: 526 LTNSNSSESALVHMQKLNLPDFTPSWVKRCVIE 558
>SPAC4C5.01 |||haloacid dehalogenase-like hydrolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 246
Score = 25.0 bits (52), Expect = 6.6
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 121 HVDVDPEQFLGSTQVIERRYYSRVSP 146
++ + P+QF+ QVI +++S + P
Sbjct: 67 NIPMTPQQFVDEQQVIRAKFWSSLKP 92
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.0 bits (52), Expect = 6.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 9 VVVLGDSGVGKTSLTHLIA 27
V++ G G+GKT+ HL+A
Sbjct: 412 VLLSGPPGIGKTTAAHLVA 430
>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 545
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 88 ILVHDLTNRKSQVNLQKWLAEILNQDSSNPTLQHVDVDPEQFLGSTQ 134
+ VHD+ N + L++W + ++D PT + + F+ T+
Sbjct: 282 LYVHDIANIYKPILLREWQKPLPDRDVPWPTFRATSIGRCPFVPETK 328
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 24.6 bits (51), Expect = 8.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 9 VVVLGDSGVGKTSLTHLIAHNKPI 32
+V+LG++G GKT+ +A N +
Sbjct: 378 IVLLGENGTGKTTFCKWMAKNSDL 401
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 9 VVVLGDSGVGKTSLTHLIAHNKPILSP 35
V+VLG+SG GK++L + + N+ + P
Sbjct: 98 VLVLGESGSGKSTLVNTLL-NRDVYPP 123
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 24.6 bits (51), Expect = 8.7
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 78 DVFYQPTHGIIL 89
D+FY+P HG IL
Sbjct: 2777 DIFYEPFHGFIL 2788
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.133 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 889,543
Number of Sequences: 5004
Number of extensions: 36281
Number of successful extensions: 177
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 123
Number of HSP's gapped (non-prelim): 46
length of query: 181
length of database: 2,362,478
effective HSP length: 69
effective length of query: 112
effective length of database: 2,017,202
effective search space: 225926624
effective search space used: 225926624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)
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