Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000364-TA|BGIBMGA000364-PA|IPR005654|AFG1-like ATPase
(342 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0996 + 10089800-10090149,10090426-10090483,10092922-100931... 95 1e-19
03_06_0707 - 35655084-35655215,35656088-35656229,35656358-356564... 57 2e-08
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 32 0.58
01_06_1700 + 39282713-39282833,39283184-39283305,39283650-392838... 32 0.76
12_02_0128 - 13969118-13969222,13969329-13969460,13969558-139696... 31 1.0
06_03_0497 + 21424732-21424899,21424992-21425057,21425176-214256... 31 1.0
09_04_0163 - 15249816-15249920,15250032-15250163,15250463-152506... 31 1.3
02_04_0281 + 21563588-21563696,21565053-21565708,21565793-215658... 30 2.3
01_01_0563 + 4142351-4144510,4145610-4147259,4147942-4148185,414... 30 2.3
08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492 29 4.1
07_01_0039 - 306384-306551,306645-306749,306845-306949,307030-30... 29 4.1
08_02_1608 - 28205483-28205851,28206244-28206522 29 5.4
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921... 29 7.1
12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861 29 7.1
10_08_1038 - 22485394-22485960,22486712-22487197 29 7.1
09_06_0346 + 22435164-22435491,22435990-22436114,22436402-224365... 29 7.1
>08_01_0996 +
10089800-10090149,10090426-10090483,10092922-10093126,
10093201-10093280,10093377-10093477,10093566-10093691,
10094099-10094101,10094736-10094763,10094875-10094961,
10095187-10095273,10095346-10095411,10095511-10095603,
10095688-10095744,10095834-10095959,10096049-10096139,
10096233-10096321,10096951-10097141,10097224-10097322,
10098814-10098829
Length = 650
Score = 94.7 bits (225), Expect = 1e-19
Identities = 65/205 (31%), Positives = 99/205 (48%), Gaps = 14/205 (6%)
Query: 30 GPWQAYTQKVSSKAL-SKDPHQERVVQHLQKVYQEISNYERPIIQEQNIGS-------FF 81
GP Y ++++S L D Q +QHLQ++Y+E+ E ++ S +
Sbjct: 210 GPMVEYERRIASGELVDGDNFQIDTIQHLQRLYEELVENEEACQLDRYQSSEKSGRRRWL 269
Query: 82 NFFXXXXXXXXXXXXGVYIWGSVGGGKTMLMDLFYDTVPIKEKLRVHFNSFMLN----IH 137
G+Y++G VG GKTMLMDLFY+ + E R H S
Sbjct: 270 WSRLITQPSTYSPVQGLYMYGGVGTGKTMLMDLFYEQLCCLEISRKHQESTWKKPSCVFL 329
Query: 138 ARIHELKIKSGKGASSFRDEGSKPFDPIPPVAADITQESWLICFDEFQVTDIGDAMILKR 197
+ +E+ + + K +G DP+ VAA+I+ E+ ++C DEF VTD+ DAMIL R
Sbjct: 330 SSFYEISVFASKQFHCVMHKGVS--DPLEVVAAEISDEAIILCLDEFMVTDVADAMILNR 387
Query: 198 LFTQLFDNGNSQISPQNDPVNNLFK 222
LF LF G +S N + L++
Sbjct: 388 LFRHLFSKGVILVSTSNRAPDQLYE 412
Score = 29.9 bits (64), Expect = 3.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 233 RPRIINI-FGRNVKFAKSCGGVLDSTFEELCDRVVIAAD 270
RP+ + + GR ++ G+ FE+LCDR + AAD
Sbjct: 476 RPQTVEVVMGRQLQVPLGANGIAYFPFEDLCDRPLGAAD 514
>03_06_0707 -
35655084-35655215,35656088-35656229,35656358-35656485,
35656852-35656944,35657183-35657252,35657324-35657445,
35658143-35658265,35659453-35659710,35659995-35660074,
35660244-35660389,35660773-35660906,35661001-35661137,
35663013-35663135,35663521-35663590,35663925-35664050,
35664166-35664393
Length = 703
Score = 57.2 bits (132), Expect = 2e-08
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 97 GVYIWGSVGGGKTMLMDLFYDTVP--IKEKLRVHFNSFMLNIHARIHELKIKSGKG---- 150
G+Y++G+VG GKTMLMD+FY IK + R HF+ ML IH +H++ + +
Sbjct: 312 GIYLYGNVGSGKTMLMDMFYGATEGLIKHRRRFHFHEAMLEIHDHMHDVWKRRDEDKSIE 371
Query: 151 ASSFRDEGSKPFD 163
+S+F S PFD
Sbjct: 372 SSAFSWISSLPFD 384
Score = 37.1 bits (82), Expect = 0.020
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 308 IFTGEEEMFACDRCLSRIMEMQTDEYWEK 336
I +G+EEMFA R +SR++EMQT Y E+
Sbjct: 647 ILSGQEEMFAFRRAISRLIEMQTSLYLER 675
Score = 35.1 bits (77), Expect = 0.082
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 239 IFGRNVKFAKSCGGVLDSTFEELCDRVVIAAD 270
+FGR ++ KSC GV FE LC R V AAD
Sbjct: 513 MFGRYLEIPKSCNGVARFDFEYLCGRPVGAAD 544
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 32.3 bits (70), Expect = 0.58
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 35 YTQKVSSKALSKDPHQERVVQHLQKVYQEISNYERPIIQEQNIGSFFNF 83
Y Q S A S P + + + + +SN +R II+ + GS NF
Sbjct: 79 YDQDKSGSAESPKPRSRLNITYFSNLIEGLSNEQRSIIENSSFGSLLNF 127
>01_06_1700 +
39282713-39282833,39283184-39283305,39283650-39283813,
39284762-39284780,39284927-39285106,39285355-39285432,
39285578-39285658,39286010-39286102,39286321-39286401,
39286499-39286661,39286778-39286898,39287183-39287255,
39287528-39287635,39287922-39288019,39288106-39288151,
39288514-39288610,39288940-39289013,39289092-39289196,
39289284-39289364,39289446-39289556
Length = 671
Score = 31.9 bits (69), Expect = 0.76
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 259 EELCDRVVIAADSEPKNLMKLDETEFGDADRALMDDLKITKDSEDAKATIFTGE-EEMFA 317
EE+ +++ A+ E L L E GDA ++ D L K +E+ K + GE ++ F
Sbjct: 292 EEMSEQLNGLANRELSVLKDLKMEEEGDAQFSVEDLLYYMKRAEELKVDLDIGEIKQFFP 351
Query: 318 CDRCLSRIMEMQTD 331
D +S I++M D
Sbjct: 352 VDLVISGILKMFQD 365
>12_02_0128 -
13969118-13969222,13969329-13969460,13969558-13969671,
13971843-13971941,13972035-13972171,13972505-13972598,
13973248-13973355,13973442-13973537,13973673-13973845,
13974818-13975172,13975308-13975442,13975524-13975667,
13975762-13976436,13976552-13976617,13976710-13976877
Length = 866
Score = 31.5 bits (68), Expect = 1.0
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 35 YTQKVSSKALSKDPHQERVVQHLQKVYQEISNYERPIIQEQNIGSFFNF 83
Y Q S A S P + + + + +SN +R II++ GS NF
Sbjct: 84 YDQDQSGSAESPKPRSRLNITYFSNLIEGLSNEQRTIIEKSAFGSLLNF 132
>06_03_0497 +
21424732-21424899,21424992-21425057,21425176-21425634,
21425945-21426088,21426172-21426306,21426418-21426808,
21427256-21427428,21427508-21427615,21427715-21427810,
21427896-21428003,21428644-21428792,21428924-21428925,
21429071-21429207,21429538-21429842,21430922-21431099,
21431192-21431305,21431373-21431504,21431610-21431843
Length = 1032
Score = 31.5 bits (68), Expect = 1.0
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 35 YTQKVSSKALSKDPHQERVVQHLQKVYQEISNYERPIIQEQNIGSFFNF 83
Y Q S A S P + + + + +SN +R II++ GS NF
Sbjct: 84 YDQDQSGSAESPKPRSRLNITYFSNLIEGLSNEQRSIIEKSAFGSLLNF 132
>09_04_0163 -
15249816-15249920,15250032-15250163,15250463-15250629,
15251259-15251448,15252530-15252661,15253275-15253382,
15253513-15253608,15253702-15253809,15253917-15254089,
15255026-15255401,15255887-15256030,15256125-15256799,
15256917-15256982,15257082-15257249
Length = 879
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 35 YTQKVSSKALSKDPHQERVVQHLQKVYQEISNYERPIIQEQNIGSFFNF 83
Y Q S A S P + + + + +SN +R II+ GS NF
Sbjct: 84 YDQDKSGSAESPKPRSRLNITYFSNLIEGLSNEQRSIIENSAFGSLLNF 132
>02_04_0281 +
21563588-21563696,21565053-21565708,21565793-21565879,
21566487-21567461,21567640-21567786
Length = 657
Score = 30.3 bits (65), Expect = 2.3
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 137 HARIHELKIKSGKGASSFRDEGSKPFDPIPPVAADITQESWLICFDEFQVTDIGDAMILK 196
H L+IKS G+SS + G P P AD+ Q+S L + + G + L
Sbjct: 405 HRFFESLRIKSSNGSSSTAESGC----PSPSSVADVKQDSCLNVGKDVSLYHSGKDISLY 460
Query: 197 RLFTQLFDNGNSQISPQN 214
T+ NG N
Sbjct: 461 HSGTKCMGNGKCSCEEAN 478
>01_01_0563 + 4142351-4144510,4145610-4147259,4147942-4148185,
4148280-4148830
Length = 1534
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 245 KFAKSCGGVLDSTFEELCDRVVIAADSEPKNLMKLDETEFGDADRALMDDLKITKD 300
K K V D FE + D+ A S N + +D+ + D+D +D +K+ D
Sbjct: 1197 KLGKDSTSVTDDLFERIMDKFEKLAYSHNCNELTIDQMKELDSDNIPLDTIKVIHD 1252
>08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492
Length = 1141
Score = 29.5 bits (63), Expect = 4.1
Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 15/114 (13%)
Query: 16 LLSSQTHAQHFVNDGPWQAYT-QKVSSKALSKDPHQERVVQHLQKVYQEISNYERPIIQE 74
L SQ H Q+ N W Y Q + +S D R+ HL E+ E QE
Sbjct: 126 LKDSQCHLQNLRN--LWVQYEIQLPNGNRVSTDVEDHRLPHHLSYPADEMVGVE----QE 179
Query: 75 QNIGSFFNFFXXXXXXXXXXXXGVYIWGSVGGGKTMLMDLFYDTVPIKEKLRVH 128
+ + N+ + +WG G GKT L + Y+ IK + H
Sbjct: 180 RTM--MMNWLKTCSTSV------ITVWGMGGSGKTTLANSIYEDERIKNQFDCH 225
>07_01_0039 -
306384-306551,306645-306749,306845-306949,307030-307111,
307457-307656,307754-307915,308043-308152,308255-308594,
308675-308749,308823-309032,309140-309343,309443-309562,
309643-309752,309832-309976,310716-310943
Length = 787
Score = 29.5 bits (63), Expect = 4.1
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 211 SPQNDPVNNLFKFLVSKETDTVRPRIINIFG-RNVKFAKSCGGVLD-STFEELCDRVVIA 268
S QN+ + L KE D +R + + R+ K A+ + D ST++E+ + V
Sbjct: 270 SSQNEALKQKTDLL--KEVDNLRGELQQVRDDRDHKLAEIHSLLADVSTYKEMTGKSVAE 327
Query: 269 ADSEPKNLMKLDETEFGDADRALMDDLKITKDSEDAKATIFTGEEEMFACDRCLSRIMEM 328
D+ L+ET A+R +L++ +E K + T E M ++ + ++
Sbjct: 328 LDNAMTRSTALEETCSSQAERIKTLELQLASANEKLKRSDLTTMETMTEYEKQKRMLEDL 387
Query: 329 Q 329
Q
Sbjct: 388 Q 388
>08_02_1608 - 28205483-28205851,28206244-28206522
Length = 215
Score = 29.1 bits (62), Expect = 5.4
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 195 LKRLFTQLFDNGNSQISPQNDPVNNLFKFLVSKETDTVRP 234
LK TQ + +G S SPQND N+ +V E V P
Sbjct: 104 LKAQATQGYGDGCSISSPQNDSCGNMLTSIVQDEQQFVGP 143
>12_02_0792 -
23191120-23191313,23191419-23191775,23192027-23192108,
23192186-23193097,23193190-23193346,23193540-23193694,
23194667-23194819,23195334-23195627,23195711-23195896,
23196062-23196662,23196868-23196992,23197101-23197197,
23197299-23197411,23198129-23198233
Length = 1176
Score = 28.7 bits (61), Expect = 7.1
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 124 KLRVHFNSFMLNIHARIHELKIKSGKGASSFRDEGSKPFDPIPPVAADITQESWLIC 180
KL V+F S +HA +H GASS + KP +PIPP+ + S+ +C
Sbjct: 617 KLLVYFASLDSYVHAELH--------GASSTIIKNHKPDNPIPPLTLN-QAGSFTVC 664
>12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861
Length = 443
Score = 28.7 bits (61), Expect = 7.1
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 263 DRVVIAADSEPKNLMKLDETEFGDADRALMDDLKITKDSEDAKATIFT-GEEEMFACDR 320
+R A S P N+ + E F + + DD+ +T +E+ + FT + +M A R
Sbjct: 199 EREHFVATSLPPNIKEEQEKLFDELENTTCDDIMVTMPAENMVSEYFTISQRDMIALRR 257
>10_08_1038 - 22485394-22485960,22486712-22487197
Length = 350
Score = 28.7 bits (61), Expect = 7.1
Identities = 17/76 (22%), Positives = 31/76 (40%)
Query: 259 EELCDRVVIAADSEPKNLMKLDETEFGDADRALMDDLKITKDSEDAKATIFTGEEEMFAC 318
EEL ++ + AD+ P + +E G+ +RAL+ D K A++ + F
Sbjct: 155 EELLSKLQVIADALPPPPAQAEENHLGECNRALVFDDSPGKSDLSNAASVLSSSSLSFQD 214
Query: 319 DRCLSRIMEMQTDEYW 334
R + + W
Sbjct: 215 SSSTDRSPDDDSSSAW 230
>09_06_0346 +
22435164-22435491,22435990-22436114,22436402-22436514,
22436919-22437023,22437147-22437531,22437645-22437776,
22437980-22438450,22438550-22439278,22439579-22439767
Length = 858
Score = 28.7 bits (61), Expect = 7.1
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 263 DRVVIAADSEPKNLMKLDETEFGDADRALMDDLKITKDSEDAKATI 308
+R+++ A ++L ++DE E D D + + KD +D KA I
Sbjct: 32 ERMLVRAGGGTRSLREIDEEEDDDDDDGGKTYVSVGKDLKDGKANI 77
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.136 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,760,982
Number of Sequences: 37544
Number of extensions: 390437
Number of successful extensions: 1021
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1004
Number of HSP's gapped (non-prelim): 21
length of query: 342
length of database: 14,793,348
effective HSP length: 83
effective length of query: 259
effective length of database: 11,677,196
effective search space: 3024393764
effective search space used: 3024393764
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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