Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000364-TA|BGIBMGA000364-PA|IPR005654|AFG1-like ATPase
         (342 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   6.7  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
          releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 27 VNDGPWQAYTQKVSSKALSKDPHQERVVQHLQKVY 61
          +    +Q Y Q++S    SKD +++    +L   Y
Sbjct: 27 IKGNDYQRYHQQISGDRFSKDFYRQDTKNNLLNAY 61


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,502
Number of Sequences: 429
Number of extensions: 3880
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 1
length of query: 342
length of database: 140,377
effective HSP length: 58
effective length of query: 284
effective length of database: 115,495
effective search space: 32800580
effective search space used: 32800580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)