Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000364-TA|BGIBMGA000364-PA|IPR005654|AFG1-like ATPase
(342 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 106 4e-24
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 31 0.24
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 1.7
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 27 3.9
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 27 5.1
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 27 5.1
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 26 6.8
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 26 6.8
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 26 6.8
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 6.8
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 106 bits (255), Expect = 4e-24
Identities = 66/219 (30%), Positives = 112/219 (51%), Gaps = 31/219 (14%)
Query: 31 PWQAYTQKVSSKALSKDPHQERVVQHLQKVYQEISNYERPIIQEQNI----GSFFNFFXX 86
P + Y +KV+ +DP+QE V+ + ++Y E+ +Y +P I + ++ GS ++
Sbjct: 36 PIEVYNKKVNDGVWKRDPYQETAVKAINRLYTELESYTQPPITQDSMPAEKGSILSWISP 95
Query: 87 XXXXXXXXXX--------------GVYIWGSVGGGKTMLMDLFYDTVP--IKEKLRVHFN 130
G+Y++G VG GKT LMDLFY +P + R+HF+
Sbjct: 96 LKKMFSRKKSPTLTSSLPVPGMPKGIYLYGDVGCGKTALMDLFYHNLPPNVTRSQRIHFH 155
Query: 131 SFMLNIHARIHELKIKSGKGASSFRDEGSKPFDPIPPVAADITQESWLICFDEFQVTDIG 190
+FM+ +H H+L+ + G F D I +A+ I +E+ ++CFDE QVTD+
Sbjct: 156 AFMMQVHRTSHDLQDRYG-----FE------IDFIDHIASGIAKETTVLCFDELQVTDVA 204
Query: 191 DAMILKRLFTQLFDNGNSQISPQNDPVNNLFKFLVSKET 229
DA++L+RLF L G N ++L+K + +E+
Sbjct: 205 DALLLRRLFEALMKYGVVIFITSNRAPSDLYKNGIQRES 243
Score = 32.3 bits (70), Expect = 0.10
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 228 ETDTVRPRIINIFGRNVKFAKSCGGVLDSTFEELCDRVVIAAD 270
E D + +FGR + K+ G V TFE+LC AAD
Sbjct: 300 EKDPAHQDEVEVFGRKIIVPKASGNVAWFTFEQLCGEPKSAAD 342
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 309 FTGEEEMFACDRCLSRIMEMQTDEY 333
F G EE+F RCLSR+ EM+ +
Sbjct: 426 FGGIEEVFTFTRCLSRLSEMKKQSW 450
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 31.1 bits (67), Expect = 0.24
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 22 HAQHFVNDGPWQAYTQKVSSKALSKDPHQERVVQHLQKVYQEISNYERPIIQEQNIGSFF 81
HA + D W+ + S K LS H+ + + Q YQ++S I+ N SFF
Sbjct: 117 HALKPLLDTAWEIFDSSPSLKTLSM-LHKSFNLHNFQSFYQKLSLDSSLILALNNFWSFF 175
Query: 82 NFF 84
N +
Sbjct: 176 NLY 178
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.3 bits (60), Expect = 1.7
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 220 LFKFLVSKETDTVRPRIINIFGRNV--KFAKSCGGVLDSTFEELCDRVVIAADSEPKNLM 277
L KFL +K+ + +I F V K +K+ +F ++ V + ADS P+ ++
Sbjct: 272 LLKFLCNKKGLSYFKAVIRAFEWLVEQKLSKTRFSAWMHSFNDVITGVRVCADSSPQAIV 331
Query: 278 KLDETEFGDADRALMDDLKIT 298
+D EF D D L+D L T
Sbjct: 332 HMD--EFEDTD-CLIDYLVAT 349
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 43 ALSKDPHQERVVQHLQKVYQEISNYERPIIQEQNIG 78
A SK H E VV+ L+ + N E + +QNIG
Sbjct: 48 ATSKSKHSEAVVEILKSAKVPLKNKEFSDLVDQNIG 83
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 149 KGASSFRDEGSKPFDPIPPVAADITQE 175
K ASS D + P P PPVA + T +
Sbjct: 307 KDASSTNDSQTTPLPPPPPVAVNSTND 333
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 212 PQNDPVNNLFKFLVSKETDTV 232
PQ + NNLF FL+ ++ DT+
Sbjct: 79 PQEEIFNNLFAFLLDQKVDTM 99
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 26.2 bits (55), Expect = 6.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 291 LMDDLKITKDSEDAKATIFTGEEE 314
LM D+ ++KD ED T+ E+E
Sbjct: 293 LMKDMHVSKDKEDVGLTVSDAEDE 316
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 26.2 bits (55), Expect = 6.8
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 245 KFAKSCGGVLDSTFEELCDRVVIAADSEPKNLMKLDETEFGDADRALMDDLKITKDS 301
+ A G + S LC + E +++ LDE E D ++D L +T D+
Sbjct: 418 QIAAETHGYVGSDLASLCSEAAMQQIREKMDMIDLDEDEI---DAEVLDSLGVTMDN 471
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 26.2 bits (55), Expect = 6.8
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 267 IAADSEPKNLMKLDETEFGDADRALMDDL----KITKDSEDAKATIFTGEEEMFACDR 320
I + KN++ LD T F ++ ++D + + + KATI G +A DR
Sbjct: 484 IVSQGPSKNILTLDWTSFWATNKKIIDPVAPRHTAVESGDVVKATIVNGPAAPYAEDR 541
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.2 bits (55), Expect = 6.8
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 148 GKGASSFRDEGSKPFDPIPPVAADITQESWLICFDEFQVTDIG 190
GK F + + + I + + + Q ICFDEF D G
Sbjct: 1908 GKNVFVFNCDNAFNYKTIQRILSGLAQIGTYICFDEFNRLDSG 1950
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.136 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,556,022
Number of Sequences: 5004
Number of extensions: 64677
Number of successful extensions: 192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 181
Number of HSP's gapped (non-prelim): 13
length of query: 342
length of database: 2,362,478
effective HSP length: 73
effective length of query: 269
effective length of database: 1,997,186
effective search space: 537243034
effective search space used: 537243034
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)
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