GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000364-TA|BGIBMGA000364-PA|IPR005654|AFG1-like ATPase
         (342 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25750| Best HMM Match : AFG1_ATPase (HMM E-Value=5.6e-12)          107   2e-23
SB_1911| Best HMM Match : AFG1_ATPase (HMM E-Value=1.8e-26)            88   1e-17
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.8  
SB_40461| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.1  

>SB_25750| Best HMM Match : AFG1_ATPase (HMM E-Value=5.6e-12)
          Length = 424

 Score =  107 bits (256), Expect = 2e-23
 Identities = 53/134 (39%), Positives = 81/134 (60%), Gaps = 6/134 (4%)

Query: 97  GVYIWGSVGGGKTMLMDLFYDTVPIKEKLRVHFNSFMLNIHARIHELKIKSGKGASSFRD 156
           G+Y++G VG GKT+LMD+FYDTVPIK K RVHF SFML +++ I+   +   +      D
Sbjct: 10  GLYLYGGVGSGKTILMDMFYDTVPIKSKRRVHFYSFMLQLYSEINRWNLCFPE------D 63

Query: 157 EGSKPFDPIPPVAADITQESWLICFDEFQVTDIGDAMILKRLFTQLFDNGNSQISPQNDP 216
           E +    PI  +A+ +  ++ L+CFDE QVTD G   +L+ +F  +FD G   ++  N  
Sbjct: 64  ESTFDVTPIQDIASRLINDNKLLCFDEMQVTDYGSVRLLEGIFCSMFDQGVIVVATSNRS 123

Query: 217 VNNLFKFLVSKETD 230
            ++L      +ET+
Sbjct: 124 PSDLGASSFGRETE 137



 Score = 39.1 bits (87), Expect = 0.005
 Identities = 19/40 (47%), Positives = 29/40 (72%), Gaps = 1/40 (2%)

Query: 294 DLKITKDSEDAKATIFTGEEEMFACDRCLSRIMEMQTDEY 333
           DL+++K  + A   I TGEEE+F+  RC+SR+ EMQ++ Y
Sbjct: 260 DLQLSK-LDLASLGILTGEEEIFSFKRCISRLNEMQSEIY 298


>SB_1911| Best HMM Match : AFG1_ATPase (HMM E-Value=1.8e-26)
          Length = 392

 Score = 87.8 bits (208), Expect = 1e-17
 Identities = 39/56 (69%), Positives = 46/56 (82%)

Query: 159 SKPFDPIPPVAADITQESWLICFDEFQVTDIGDAMILKRLFTQLFDNGNSQISPQN 214
           S+PFDPIPPVA +I+ +SWL+CFDEFQVTDI DAMIL+RLFT LFD G   I+  N
Sbjct: 95  SQPFDPIPPVAEEISLKSWLLCFDEFQVTDIADAMILRRLFTALFDKGVVVIATSN 150



 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 35/74 (47%), Positives = 51/74 (68%), Gaps = 3/74 (4%)

Query: 264 RVVIAADSEPKNLMKLDETEFGDAD--RALMDDLKITKDSED-AKATIFTGEEEMFACDR 320
           R+V +A++ P +L +       D +  R LMDDL ++ DS D +KA+IFT EEE+FA +R
Sbjct: 307 RLVCSAEASPSDLFQASPLSTKDLEFQRMLMDDLSLSSDSADNSKASIFTAEEEIFAFER 366

Query: 321 CLSRIMEMQTDEYW 334
            +SRI EMQT++YW
Sbjct: 367 TVSRITEMQTEQYW 380



 Score = 38.3 bits (85), Expect = 0.009
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 214 NDPVNNLFKFLVSKETDT--VRPRIINIFG--RNVKFAKSCGGVLDSTFEELCDRVVIAA 269
           N  ++ +F+ L   E DT   R R I + G  R +   ++C  V D TFEELC R + AA
Sbjct: 204 NKELDGIFRNLTDYEEDTCKTRARDIPVLGGARTLHAPRTCDRVADFTFEELCARPLGAA 263

Query: 270 D 270
           D
Sbjct: 264 D 264



 Score = 32.7 bits (71), Expect = 0.44
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 27 VNDGPWQAYTQKVSSKALSKDPHQERVVQHLQKVYQ 62
          +  GP + Y + V S  LS D HQ ++V+ LQ++++
Sbjct: 45 ITKGPLRDYDELVESGQLSIDKHQRQIVEKLQEIHK 80


>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1495

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 7/82 (8%)

Query: 5   HQTKLCNKCMRLLSSQTHAQHFVNDGPWQAYTQKVS--SKALSKDPHQERVVQHLQKVYQ 62
           HQ K CNK +   +  T    F  +   Q  +   S  S+AL K     +++ +++ +Y+
Sbjct: 514 HQAKTCNKSICPGAEATFEMRFTEEKCSQDLSSLNSPVSQALVK-----KIILNVESIYR 568

Query: 63  EISNYERPIIQEQNIGSFFNFF 84
           + S Y + ++   + GS   FF
Sbjct: 569 DDSTYIKTVVHNFSCGSVVAFF 590


>SB_40461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 232 VRPRIINIFGRNVKFAKSC-GGVLDSTFE-ELCDRVVIAADSEP--KNLMKLDETEFGDA 287
           VR R+     RN  +A SC GG   S  E E    V +  D+ P  ++L  L +    + 
Sbjct: 263 VRVRVAVRRWRNTWWADSCRGGSSASADEPEPAGLVAVTLDASPAYQSLRHLAKLSRLEV 322

Query: 288 DRALMDDLKITKDSEDA 304
            +++MDDL+  KD++ A
Sbjct: 323 PKSIMDDLQTIKDNDVA 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,098,210
Number of Sequences: 59808
Number of extensions: 437394
Number of successful extensions: 1257
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1250
Number of HSP's gapped (non-prelim): 8
length of query: 342
length of database: 16,821,457
effective HSP length: 83
effective length of query: 259
effective length of database: 11,857,393
effective search space: 3071064787
effective search space used: 3071064787
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)