GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000364-TA|BGIBMGA000364-PA|IPR005654|AFG1-like ATPase
         (342 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    26   1.3  
M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              23   9.4  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 18/86 (20%), Positives = 43/86 (50%), Gaps = 5/86 (5%)

Query: 235 RIINIFGRNVKFAKSCGGVLDSTFEELCDRVV----IAADSEPKNLMKLDETEFGDADRA 290
           R++N+    VKF +SC  +++   ++   +V      AA S   +L++     F + +  
Sbjct: 686 RLVNVDEEKVKFERSCRTIIEQLLDQQRRKVAALERYAAASREHDLLEQRIRLFEERNND 745

Query: 291 LMDDLKITKDS-EDAKATIFTGEEEM 315
              + ++ +D+ + AK T+   E+++
Sbjct: 746 REANFRLLEDAYQSAKKTLANVEKKL 771


>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 33  QAYTQKVSSKALSKDPHQERVVQHLQKVYQEISNYERPIIQEQ 75
           Q   Q+   +   +  HQ+R  Q  Q+V Q+   ++R   Q+Q
Sbjct: 253 QRNQQREWQQQQQQQQHQQREQQQQQRVQQQNQQHQRQQQQQQ 295


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 346,820
Number of Sequences: 2123
Number of extensions: 13859
Number of successful extensions: 64
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 2
length of query: 342
length of database: 516,269
effective HSP length: 64
effective length of query: 278
effective length of database: 380,397
effective search space: 105750366
effective search space used: 105750366
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)