GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000364-TA|BGIBMGA000364-PA|IPR005654|AFG1-like ATPase
         (342 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006610-2|AAK85448.1|  445|Caenorhabditis elegans Hypothetical ...   157   1e-38
Z69662-3|CAA93502.1|  449|Caenorhabditis elegans Hypothetical pr...    30   2.7  
Z81114-3|CAB03289.1|  664|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AC024859-16|AAK29984.1|  375|Caenorhabditis elegans Hypothetical...    28   8.4  

>AC006610-2|AAK85448.1|  445|Caenorhabditis elegans Hypothetical
           protein C30F12.2 protein.
          Length = 445

 Score =  157 bits (380), Expect = 1e-38
 Identities = 79/194 (40%), Positives = 118/194 (60%), Gaps = 13/194 (6%)

Query: 34  AYTQKVSSKALSKDPHQERVVQHLQKVYQEISNYE---RPIIQEQNIGSFFNFFXXXXXX 90
           AY++KV+   L +D +Q +++   +++ +EI +Y+   +  I E++   F+  F      
Sbjct: 24  AYSKKVNEGTLKEDDYQRKMIVDFERLRKEIESYQPTNKSNISEKSSSRFWKMFQNSKVD 83

Query: 91  XXXXXX--GVYIWGSVGGGKTMLMDLFYDTVPIKEKLRVHFNSFMLNIHARIHELKIKSG 148
                   G+Y++GSVG GKTMLMDLF++  PI +K RVHFN FM N+H R+HELK++S 
Sbjct: 84  TPKIISPRGIYLYGSVGCGKTMLMDLFFENCPIDKKRRVHFNDFMQNVHKRMHELKMQSN 143

Query: 149 KGASSFRDEGSKPFDPIPPVAADITQESWLICFDEFQVTDIGDAMILKRLFTQLFDNGNS 208
           K            FDP+P +  +I + + L+CFDEFQVTDI DAMILKR F+ LFD G  
Sbjct: 144 KARGK--------FDPVPVIVDEIMETTNLLCFDEFQVTDIADAMILKRFFSMLFDRGLV 195

Query: 209 QISPQNDPVNNLFK 222
            ++  N   + L+K
Sbjct: 196 MVATSNRAPSELYK 209



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 5/82 (6%)

Query: 257 TFEELCDRVVIAADSEPKNLMKLD-----ETEFGDADRALMDDLKITKDSEDAKATIFTG 311
           TF +   RVVI A +    L + +          D+ R LMDDL I  D E   A +F+G
Sbjct: 350 TFYDQKVRVVIGAAAPLDELFQFEGHNTSHDALSDSKRMLMDDLGIKSDHEGMSANVFSG 409

Query: 312 EEEMFACDRCLSRIMEMQTDEY 333
           +EE FA  R +SR+ EMQT++Y
Sbjct: 410 DEEAFAYSRTVSRLYEMQTEKY 431



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/49 (44%), Positives = 28/49 (57%)

Query: 214 NDPVNNLFKFLVSKETDTVRPRIINIFGRNVKFAKSCGGVLDSTFEELC 262
           N   + +FK   + E DTVR + + I GR V   K CGGV D  F+ELC
Sbjct: 258 NTQCDIVFKQSAANENDTVRSKTLEILGRRVIVEKCCGGVADVDFKELC 306


>Z69662-3|CAA93502.1|  449|Caenorhabditis elegans Hypothetical
           protein F56D5.3 protein.
          Length = 449

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 206 GNSQISPQNDPVNNLFKFLVSKETDTVRPRIINIFGRNVKFAKSCG 251
           G S I  + DP  +++   ++  TD ++  +++ F    KFA  CG
Sbjct: 141 GVSDIELKTDPPGSMYGKPIALTTDQIKTEVVDRFVYAAKFAYECG 186


>Z81114-3|CAB03289.1|  664|Caenorhabditis elegans Hypothetical
           protein T04D3.3 protein.
          Length = 664

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 164 PIPPVAADITQESWLICFDEFQVTDIGDAMILKRLFTQLFD 204
           PIPP  A++ +E     F  FQ+ ++ +   LK +  +LF+
Sbjct: 259 PIPPEIAELMKEVCTWSFSPFQLNEVSEGHALKYVGFELFN 299


>AC024859-16|AAK29984.1|  375|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.20a protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 25  HFVND---GPWQAYTQKVSSKALSKDPHQERVVQHLQKVYQEISNYERPIIQEQNIGSFF 81
           +F+N    GP+  ++ ++ +  +S  PH ++V   + K+Y+     + P++Q    GS F
Sbjct: 242 NFINQTKTGPFHEHSNQLWN--ISAVPHWKKVNSGMFKMYEGEVLKKFPVVQHMMFGSLF 299

Query: 82  NF 83
           +F
Sbjct: 300 SF 301


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,471,465
Number of Sequences: 27539
Number of extensions: 350743
Number of successful extensions: 936
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 929
Number of HSP's gapped (non-prelim): 7
length of query: 342
length of database: 12,573,161
effective HSP length: 82
effective length of query: 260
effective length of database: 10,314,963
effective search space: 2681890380
effective search space used: 2681890380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)