Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000363-TA|BGIBMGA000363-PA|undefined
         (160 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28665| Best HMM Match : TGF_beta (HMM E-Value=1.2e-22)              38   0.004
SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.78 
SB_51971| Best HMM Match : rve (HMM E-Value=7.7e-31)                   30   1.0  
SB_45733| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_24810| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_49539| Best HMM Match : RVT_1 (HMM E-Value=1.8e-39)                 27   9.6  
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_28665| Best HMM Match : TGF_beta (HMM E-Value=1.2e-22)
          Length = 350

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 12/90 (13%)

Query: 70  CASCRSS-EKARENSLRVIRENLLAKLGFTQAPNTTGRQLPHVPAYLMKRFERRKPRPGV 128
           C  C    E  +++ L+ I++ +L KLG   APN T  ++P++P  L++  E  +     
Sbjct: 20  CPLCADPMENLKQDRLQAIQQQILDKLGLPFAPNLTDPKIPNIPP-LLRLLETSR----- 73

Query: 129 QSDALAPSRTFVTHTEQDDFLARTDNVLIF 158
            +  LA SR  V H  +D++ A+T  +++F
Sbjct: 74  -NAELAASR--VKH--EDNYHAKTKTIIMF 98


>SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 73  CRSSEKAR--ENSLRVIRENLLAKLGFTQAPNTTGRQLPHVPAYLMKRFERRKP---RPG 127
           CR  EK +   N++ V   +       T AP+T+ R L ++P     ++E +KP   R G
Sbjct: 119 CRFGEKCKFVHNTIPVGATSANEPDSETAAPHTSVRTLRYIPNEEETQWEEKKPKKRRVG 178

Query: 128 VQSDALAPSRTFVTHTEQ 145
           V +D+L P +  V   EQ
Sbjct: 179 V-TDSLVPPKRAVKAYEQ 195


>SB_51971| Best HMM Match : rve (HMM E-Value=7.7e-31)
          Length = 488

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 98  TQAPNTTGRQLPHVPAYLMKRFERRKPRPGVQSD 131
           T  P  T    P VP+  +KR+ RR P P V+ D
Sbjct: 454 TVVPTCTTESPPDVPSTPVKRYPRRTPNPVVRLD 487


>SB_45733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 102 NTTGRQLPHVPAYLMKRFERRKPRPGVQSDALAPSRTFVTHTEQDD 147
           + +G+ LP +P+  + R  R  P  GV S+ L      +T +EQ +
Sbjct: 47  SNSGKSLPALPSIPVDRSRRESPTGGVDSNRLRNLEGRLTLSEQSN 92


>SB_24810| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)

Query: 64  TTTQIACASCRSSEKARENSLRVIRENLLAKLGFTQAPNTTGRQLPHVP 112
           TT   + AS RS    R  S+ ++R   +   G+T  P T G+    VP
Sbjct: 272 TTDGWSSASFRSGCNGRGPSVTIVRVGKMVFGGYTDVPWTNGKVYTDVP 320


>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1574

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 101  PNTTGRQLPHVPAYLMKRFERRKPRPGVQSD 131
            P  T  Q  HVP Y++  F+ RK     QS+
Sbjct: 1155 PYQTNPQFSHVPKYMLSSFDGRKKDEWWQSE 1185


>SB_49539| Best HMM Match : RVT_1 (HMM E-Value=1.8e-39)
          Length = 1311

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 98   TQAPNTTGRQLPHVPAYLMKRFERRKPRP 126
            T AP  T    P V +  +KR+ RR P+P
Sbjct: 1141 TVAPTCTTESPPDVASTPVKRYPRRTPKP 1169


>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 12   HRLSRYAAASPLCRTTRPLGATSGPR 37
            HR SR  + + L R TRP  +TSG R
Sbjct: 1004 HRDSRQYSTNELVRQTRPSPSTSGTR 1029


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.129    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,909,524
Number of Sequences: 59808
Number of extensions: 165409
Number of successful extensions: 325
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 318
Number of HSP's gapped (non-prelim): 8
length of query: 160
length of database: 16,821,457
effective HSP length: 77
effective length of query: 83
effective length of database: 12,216,241
effective search space: 1013948003
effective search space used: 1013948003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)