GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000363-TA|BGIBMGA000363-PA|undefined
         (160 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    27   1.0  

>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 77  EKARENSLRVIRENLLAKLGFTQAPNTTGRQLPHVPAYLMKRFERRKPRPGVQSDALAPS 136
           E+ +E  L + R +LL          TT   +P    Y    F RRKP+    +++L+ S
Sbjct: 79  ERLQEQILNLER-SLLNYKSLKSNSTTTVATVPSEKRY----FFRRKPKTSSTTNSLSSS 133

Query: 137 RTFVTHTEQD 146
            + V+H  QD
Sbjct: 134 SSSVSHMNQD 143


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.129    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 605,818
Number of Sequences: 5004
Number of extensions: 19246
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 2
length of query: 160
length of database: 2,362,478
effective HSP length: 68
effective length of query: 92
effective length of database: 2,022,206
effective search space: 186042952
effective search space used: 186042952
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)