Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000363-TA|BGIBMGA000363-PA|undefined
(160 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1704 - 35481041-35481461,35481682-35481810,35482291-354823... 30 1.0
11_01_0593 - 4705565-4705822,4705916-4706065,4706160-4706307,470... 29 1.3
08_02_0494 + 17774040-17774064,17774581-17774651,17774733-17775785 28 4.1
07_03_1556 + 27692770-27694119 28 4.1
01_06_0405 + 29103723-29103839,29103928-29104012,29104572-291046... 28 4.1
08_01_0288 - 2327613-2327618,2327664-2327709,2327960-2328094,233... 27 5.4
05_06_0244 + 26643193-26643306,26643398-26643493,26643819-266438... 27 5.4
04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158 27 7.1
>04_04_1704 -
35481041-35481461,35481682-35481810,35482291-35482397,
35482515-35482583,35482825-35482936,35483013-35483131,
35483211-35483291,35483629-35483700,35484039-35484239,
35484442-35484528,35485284-35485523,35485991-35486455,
35487434-35487556,35487643-35487769,35487851-35487919,
35488061-35488189,35488628-35488722,35488808-35488876,
35489332-35489443,35489545-35489663,35489753-35489833,
35490898-35490969,35491052-35491267,35491524-35491601,
35491694-35491831,35492403-35492414,35492639-35492872,
35493076-35493130,35493222-35493352,35493813-35494546,
35494613-35494820
Length = 1634
Score = 29.9 bits (64), Expect = 1.0
Identities = 18/67 (26%), Positives = 27/67 (40%)
Query: 81 ENSLRVIRENLLAKLGFTQAPNTTGRQLPHVPAYLMKRFERRKPRPGVQSDALAPSRTFV 140
++S+R I ++L +L T R PHV P +D PS +FV
Sbjct: 98 DDSIRDILDDLTTRLDSLSVDRPTARPRPHVSPLPCALHADPDPSQSQLNDGTKPSSSFV 157
Query: 141 THTEQDD 147
+ DD
Sbjct: 158 DCDDDDD 164
>11_01_0593 -
4705565-4705822,4705916-4706065,4706160-4706307,
4706400-4706479,4706573-4706739,4706830-4707078,
4707161-4707733,4707833-4707972,4708064-4708185,
4708622-4708743,4708877-4709105
Length = 745
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Query: 15 SRYAAASPLC---RTTRPLGATSGPR 37
SRY++ASP+C RTT P G TS R
Sbjct: 306 SRYSSASPVCSEYRTTTPDGITSASR 331
>08_02_0494 + 17774040-17774064,17774581-17774651,17774733-17775785
Length = 382
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 62 EPTTTQIACASCRSSEKARENSLRVIRENLLAKLGFTQAPNTTGRQLP 109
E T IAC + ++ + + EN+ +K G NTT + P
Sbjct: 298 EVATLAIACTKFKGEDRPTMREVEMALENIASKKGLFHNGNTTASRRP 345
>07_03_1556 + 27692770-27694119
Length = 449
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 76 SEKARENSLRVIRENLLAKLGFTQAPNTTGRQLPHVPAYLMK 117
+++A ++ R++ + LA G AP +GRQL P Y+++
Sbjct: 69 ADQAARDASRLLYLDSLAVKGRAYAPIASGRQLLQTPTYVVR 110
>01_06_0405 +
29103723-29103839,29103928-29104012,29104572-29104674,
29104798-29104882,29105414-29105497,29105627-29105730,
29106522-29106783,29106978-29107414,29107637-29107718,
29109913-29110089,29110640-29110732,29110812-29110877,
29110992-29111038,29111165-29111430,29111443-29111845,
29111992-29112376
Length = 931
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 7 PPAASHRLSRYAAASPLCRTTRP 29
PPA +H+LSR A+ LC +P
Sbjct: 842 PPAEAHKLSRCTASMRLCPVLQP 864
>08_01_0288 -
2327613-2327618,2327664-2327709,2327960-2328094,
2330218-2330612,2330626-2330820
Length = 258
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 63 PTTTQIACASCRSSEKARENSLRVIRENLLAKLGFTQ 99
P + ACA+CR + A+ S V NLLA+ Q
Sbjct: 106 PGDERAACAACRDTYYAQARSSTVAAMNLLAECSLGQ 142
>05_06_0244 +
26643193-26643306,26643398-26643493,26643819-26643884,
26643965-26644024,26644108-26644164,26644464-26644593,
26645114-26645181,26645276-26645368,26645473-26645520,
26645882-26646019,26646738-26646833,26647979-26648050,
26648928-26648982,26649078-26649112,26649808-26649963
Length = 427
Score = 27.5 bits (58), Expect = 5.4
Identities = 21/77 (27%), Positives = 31/77 (40%)
Query: 79 ARENSLRVIRENLLAKLGFTQAPNTTGRQLPHVPAYLMKRFERRKPRPGVQSDALAPSRT 138
AR S + N L K F A T ++ K+ ER+ ++ + +R
Sbjct: 182 ARARSFDEVAGNPLVKETFNAAHETERKRALSALLSQTKQQERKDAEILAEAKRIMETRA 241
Query: 139 FVTHTEQDDFLARTDNV 155
HTE+ LA DNV
Sbjct: 242 ASKHTEEAGALAHFDNV 258
>04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158
Length = 974
Score = 27.1 bits (57), Expect = 7.1
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 88 RENLLA--KLGFTQAPNTTGRQLPHVPAYLMKRFERRKP-RPG 127
R NL++ + F++ P + R LP +P+ R RR+P RPG
Sbjct: 375 RGNLISPSRWSFSRPPRRSRRALPAIPSPAGLRPRRRRPRRPG 417
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.129 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,263,821
Number of Sequences: 37544
Number of extensions: 145895
Number of successful extensions: 318
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 8
length of query: 160
length of database: 14,793,348
effective HSP length: 77
effective length of query: 83
effective length of database: 11,902,460
effective search space: 987904180
effective search space used: 987904180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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