GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000363-TA|BGIBMGA000363-PA|undefined
         (160 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117195-14|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    27   4.8  
AF003384-11|AAL08042.1|  487|Caenorhabditis elegans Hypothetical...    27   4.8  
AF003384-10|AAB54241.3|  351|Caenorhabditis elegans Hypothetical...    27   4.8  

>AL117195-14|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18 protein.
          Length = 1456

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 84   LRVIRENLLAKLGFTQAPNTTGRQLPHVPAYLMKRFERRKPRPGVQSDALAPSRTFVTHT 143
            LR  + ++ + L  T AP    +Q P  P+YL  +  + +P+   Q  A + S +  T+ 
Sbjct: 1288 LRGSQNSMASGLSSTGAPQQQQQQAPPQPSYLRSQSSQSQPQQQQQQQA-SMSMSQATYQ 1346

Query: 144  EQ 145
            +Q
Sbjct: 1347 QQ 1348


>AF003384-11|AAL08042.1|  487|Caenorhabditis elegans Hypothetical
           protein K07B1.7b protein.
          Length = 487

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 75  SSEKARENSLRVIRENLLAKLGFTQ----APNTTGRQLPHVPAYLMKRFERRKPRPG 127
           SSEKA EN  + I  ++LAK+G+        N  GR +P V  Y+ +  +  K + G
Sbjct: 387 SSEKASENLQKGIGGSMLAKMGWKPGTGLGKNEQGRVVP-VAVYVEEDGQSSKEKTG 442


>AF003384-10|AAB54241.3|  351|Caenorhabditis elegans Hypothetical
           protein K07B1.7a protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 75  SSEKARENSLRVIRENLLAKLGFTQ----APNTTGRQLPHVPAYLMKRFERRKPRPG 127
           SSEKA EN  + I  ++LAK+G+        N  GR +P V  Y+ +  +  K + G
Sbjct: 235 SSEKASENLQKGIGGSMLAKMGWKPGTGLGKNEQGRVVP-VAVYVEEDGQSSKEKTG 290


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.129    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,462,651
Number of Sequences: 27539
Number of extensions: 116278
Number of successful extensions: 248
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 3
length of query: 160
length of database: 12,573,161
effective HSP length: 76
effective length of query: 84
effective length of database: 10,480,197
effective search space: 880336548
effective search space used: 880336548
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)