GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000363-TA|BGIBMGA000363-PA|undefined
         (160 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)...    31   0.37 
At1g09030.1 68414.m01007 histone-like transcription factor (CBF/...    27   6.0  

>At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)
           (FAS1) identical to FAS1 [Arabidopsis thaliana]
           GI:4887626
          Length = 815

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 81  ENSLRVIRENLLAKLGFTQAPNTTGRQLPH-VPAYLMKRF--ERRKPRPGVQSDA 132
           E+S   +++ +L KLG + +P+  G++LP  +  +  KR      KP+P V+  A
Sbjct: 753 EDSRWQVKKEVLTKLGLSPSPDKGGKRLPKTISTFFSKRCLPPSTKPQPAVEDAA 807


>At1g09030.1 68414.m01007 histone-like transcription factor
           (CBF/NF-Y) family protein contains Pfam PF00808 :
           Histone-like transcription factor (CBF/NF-Y) and
           archaeal histone; similar to CAAT-box DNA binding
           protein subunit B (NF-YB) (GI:22380) [Zea mays]
          Length = 139

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 60  VQEPTTTQIACASCRSSEKA-RENSLRVIRENL---LAKLGFTQAPNTTGRQLPHVPAYL 115
           VQE  T  I+  +C +SEK  REN   V  +++   L+ LG     +  GR L       
Sbjct: 35  VQECATEFISFVTCEASEKCHRENRKTVNGDDIWWALSTLGLDNYADAVGRHLHKYREAE 94

Query: 116 MKRFERRK 123
            +R E  K
Sbjct: 95  RERTEHNK 102


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.129    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,185,089
Number of Sequences: 28952
Number of extensions: 101709
Number of successful extensions: 214
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 2
length of query: 160
length of database: 12,070,560
effective HSP length: 76
effective length of query: 84
effective length of database: 9,870,208
effective search space: 829097472
effective search space used: 829097472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)