Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000361-TA|BGIBMGA000361-PA|IPR009057|Homeodomain-like
         (243 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    24   0.93 
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    22   4.9  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 203 KELATVRHLASQRSYNPLNIPEEFLKPSLCIKSKE 237
           K L  ++++ SQ  + P   PE+  + + CI  K+
Sbjct: 444 KYLPVLKNMPSQYIHEPWTAPEQVQRAAKCIIGKD 478


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 50  PEEIIHAIDYYKNLALLEVKPL 71
           PE++    DYYK++ L  +K L
Sbjct: 214 PEDVPGCEDYYKDVDLKALKKL 235


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.133    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,083
Number of Sequences: 317
Number of extensions: 2552
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 243
length of database: 114,650
effective HSP length: 55
effective length of query: 188
effective length of database: 97,215
effective search space: 18276420
effective search space used: 18276420
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)