Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000361-TA|BGIBMGA000361-PA|IPR009057|Homeodomain-like
         (243 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|...    33   0.038
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    29   0.47 
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    28   1.4  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    27   1.9  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    27   3.3  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    26   4.3  
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ...    26   4.3  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    26   5.7  

>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 572

 Score = 33.1 bits (72), Expect = 0.038
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 3/103 (2%)

Query: 45  ISTKTPEEIIHAIDYYKNLALLEVKPLDKKIKTN--TRPCKNPRIPLACWAKLLTDTLHY 102
           +S + P E    IDY   +ALL+ KP+  ++ TN  ++PC  P  P +   +  T    Y
Sbjct: 147 VSIQRPTEAPRLIDYAIKMALLKKKPVYIEVPTNVASQPCAAPG-PASLITEPETSNQEY 205

Query: 103 KSLQTETSTAIRMIADLENIPPALNTDKFDFRKIYLQIANAMD 145
             +  + S  I        +        F     +L++AN+++
Sbjct: 206 LQMAVDISAKIVNGKQKPVLLAGPKLRSFKAESAFLELANSLN 248


>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 163 ILETALISKAFIRTSSLK-NLCKTITVTQKEMNYYPMFVHNKELATVRHLASQRSYNP 219
           IL+  ++ + FI+  +LK  L K ITV    +++      +KE+     LA+  +Y P
Sbjct: 47  ILKLTILHQPFIKVHTLKLQLIKRITVLHPAISHCSACAGSKEVLQTWDLAANTTYRP 104


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 108 ETSTAIRMIADLENIPPALNTDKFDFRKIYLQIANAMDGKPIPDDKYSGLILKKCILETA 167
           E  T +  I  L  +  AL+T  F   K Y+   +A +GK +P+ +  G+ +    + T 
Sbjct: 366 EGITGLMFIPILVGVVGALSTTPF-LEKQYMAKLDANNGKSVPEWRLVGMCIASPFIPTG 424

Query: 168 LI 169
           L+
Sbjct: 425 LL 426


>SPCC1795.08c |||histone acetyltransferase complex subunit
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 20 KDEKLSLLYALKTCGSKNIDWIHQNISTKTPEEIIHAIDYYK 61
          K EKL LL+ L       ++W+H + S   PE++    ++Y+
Sbjct: 51 KHEKLLLLFWLHCKFPNGLEWLHSS-SDLLPEQVSEWFNFYQ 91


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/38 (23%), Positives = 23/38 (60%)

Query: 158 ILKKCILETALISKAFIRTSSLKNLCKTITVTQKEMNY 195
           +L++C++E   +  A +  S+ + LC  I + +K++ +
Sbjct: 294 VLEECLVELDKLEHATVLLSTNQELCDQIEINKKKLEF 331


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 126  LNTDKFDFRKIYLQIANAMDGKPIPDDKYSGLIL 159
            L  D  D+R IY   ANA+DG  + D   +GL++
Sbjct: 1389 LRGDNTDWRGIYDTFANALDGVSLRDT--NGLVI 1420


>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 539

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 154 YSGLILKKCILETALISKAFIRTSSLKNLCKTITVTQKEMNYYPMFVHNKEL 205
           Y  ++LK   L+  + S+  + +S +  LC     TQ++ N   MFV +  L
Sbjct: 153 YQTILLKMFELKRGIESRDLLMSSIISYLCDLEGSTQRQANPGAMFVPSHPL 204


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 5/78 (6%)

Query: 45  ISTKTPEEIIHAIDYYKNLALLEVKPLDKKIKTN--TRPCKNPRIPLACWAKLLTDTLHY 102
           ++ K  E+    ID+    A+L+ KP+  +I TN   +PC  P  P++  A +  +    
Sbjct: 142 VAIKRAEDAPVMIDHAIRQAILQHKPVYIEIPTNMANQPCPVPG-PIS--AVISPEISDK 198

Query: 103 KSLQTETSTAIRMIADLE 120
           +SL+  T  A  +I+  E
Sbjct: 199 ESLEKATDIAAELISKKE 216


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,222,062
Number of Sequences: 5004
Number of extensions: 50677
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 137
Number of HSP's gapped (non-prelim): 8
length of query: 243
length of database: 2,362,478
effective HSP length: 71
effective length of query: 172
effective length of database: 2,007,194
effective search space: 345237368
effective search space used: 345237368
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)