Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000361-TA|BGIBMGA000361-PA|IPR009057|Homeodomain-like
(243 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13) 30 1.5
SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_20298| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_58505| Best HMM Match : VWA (HMM E-Value=8.8e-22) 28 8.1
SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_15799| Best HMM Match : PH (HMM E-Value=0.76) 28 8.1
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 28 8.1
SB_56919| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00038) 28 8.1
SB_33705| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_30536| Best HMM Match : fn3 (HMM E-Value=0.079) 28 8.1
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 31.1 bits (67), Expect = 0.87
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 4 PESPPPDEVQKLEGWTKDEKLSLLYALKTCGSKNIDWIHQNISTKTPE 51
P SP D +++ + W +DEKL + N++ H N+S + PE
Sbjct: 1478 PPSPRADPMKQQQKWQEDEKLGATATISPVLYANLE--HPNLSAEYPE 1523
>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
Length = 3035
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 175 RTSSLKNLCKTITVTQKEMNYYPMFVHNKELATVRHLASQRSYNPLNIPEEFLKPS 230
+TS +N C+ + + +PM V+ K+ + +S R Y +++ E F+ S
Sbjct: 941 KTSKHENWCRDYQMLCRSYGKFPMGVNYKDTSKYYEYSSCRKYGSVHLTERFITDS 996
>SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 888
Score = 29.9 bits (64), Expect = 2.0
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 13/124 (10%)
Query: 103 KSLQTETSTAIRMIADLENIPPALNTDKFDFRKIYLQIANAMDGKPIPDDKYSGLILKKC 162
+ L+ S +I DL + +L + + +K+ Q+A A+D K I D +
Sbjct: 269 EELKKAESKNATLIGDLSSARESLKEKEANCKKLEQQLAEAVDSKSINSDSMKTI----- 323
Query: 163 ILETALISKAFIRTSSLKNLCKTITVTQKEMNYYPMFVHN--KELATVRHLA---SQRSY 217
TA +++A R S L+N+ ++ ++ + N KEL LA S++++
Sbjct: 324 ---TAKLTEATNRVSELQNMFTSMETQLQKSQERQVEKDNQIKELELKLKLAQEDSKQNH 380
Query: 218 NPLN 221
+P+N
Sbjct: 381 SPVN 384
>SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 28.7 bits (61), Expect = 4.6
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 52 EIIHAIDYYKNLALLEVKPLDKKIKTNTRPCKNPRIPLAC-WAKLLTDTLH-YKSLQTET 109
E ID+ ++L + VK L +KTN R CK+ P ++ D L+ Y+ L
Sbjct: 350 EATRNIDHLRDLEV--VKQLGNILKTNVRGCKSIGHPFVTQLGRIYLDMLNVYRCLSENI 407
Query: 110 STAIRMIADLENIPP---ALNTDKFD-FRKIYLQIANAMDGKPIPDD 152
S AI +L P A+ T K + R I ++ + D K + D+
Sbjct: 408 SMAISENGELVMKQPLIRAMRTVKTEVLRLISTWVSKSNDPKLVCDN 454
>SB_20298| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 206 ATVRHLASQRSYNPLNIPEEFLKPSLCIKSKEEEN 240
A ++A+Q SY P PEE KP KS+E+E+
Sbjct: 35 AQTEYMAAQSSYIP-KPPEETEKPEAAAKSEEKES 68
>SB_58505| Best HMM Match : VWA (HMM E-Value=8.8e-22)
Length = 410
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 10 DEVQKLEGWTKDEKLSLLYALKTCGSKNI 38
DE++KL G ++ K LL+ L T GS ++
Sbjct: 88 DELKKLRGSVENRKADLLFLLDTSGSLSL 116
>SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 27.9 bits (59), Expect = 8.1
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 152 DKYSGLILKKCILETALISKAFIRTS-SLKNLCK-TITVTQKEMNYYPMFVHNKELATVR 209
D Y+ I+ + ++ K T + N + TI +T + Y FV+ R
Sbjct: 39 DNYTQTIVTSSFSDCDILDKTICMTVYGVYNDAEVTINITSTTRSRYSRFVYYN----YR 94
Query: 210 HLASQRSYNPLNIPEEFLK 228
H+ RS P IP+ FL+
Sbjct: 95 HVRCSRSREPSRIPKRFLR 113
>SB_15799| Best HMM Match : PH (HMM E-Value=0.76)
Length = 836
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 12 VQKLEGWTKDEKLSLLYALKTCGSKNIDWIH--QNISTKTPEEIIHAIDY 59
+QK+ T E +S+LY G + +W + EE I +DY
Sbjct: 747 LQKMRSQTSFEDISILYLFARTGREKEEWYQYFSKLMVSNKEETISDLDY 796
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 12 VQKLEGWTKDEKLSLLYALKTCGSKNIDWIH--QNISTKTPEEIIHAIDY 59
+QK+ T E +S+LY G + +W + EE I +DY
Sbjct: 621 LQKMRSQTSFEDISILYLFARTGREKEEWYQYFSKLMVSNKEETISDLDY 670
>SB_56919| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00038)
Length = 459
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 1 MTTPESPPPDEV--QKLEGWTKDEKLSLLYALKTCGSKNIDWIHQNISTKTPEEI 53
+T E D++ + W+K E + A + G ++D I Q + KTP+E+
Sbjct: 65 LTEEEQSEKDQLLQEGFTNWSKREFNQFIKACEKYGRDDMDNICQEVEGKTPQEV 119
>SB_33705| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 846
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 28 YALKTCGSKNIDWIHQNISTKTPE--EIIHAIDYYKNLALLEVKPLDKKIKTNTRPCK 83
Y KT +IDW + ST T E + ++YYK +E++ LD+ + N RP K
Sbjct: 26 YNNKTYRVDDIDWNKRPTSTFTFHNGEQMTFVEYYKKSYEIEIRDLDQPMIVN-RPKK 82
>SB_30536| Best HMM Match : fn3 (HMM E-Value=0.079)
Length = 754
Score = 27.9 bits (59), Expect = 8.1
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 17 GWTKDEKLSLLYALKTCGSKNIDWIHQNISTKTPEEIIHAIDYYKNLALLEVKPLDKKIK 76
G +D SL ++ NID +H+ + TP ++ N+ ++ PL +
Sbjct: 623 GTGQDTPDSLEARAESTQRHNIDALHRRLHGTTPVAVL------TNITKVKSTPLSPQTS 676
Query: 77 TNTRPCKNPRIPLACWAKLLTDTLHYKSLQTETSTAIRMIADLENIPPALNTDK 130
+ +P K R+P C + D+L SL E+S + R + P+L D+
Sbjct: 677 FSPKPLKLRRVPSPCRS---CDSL---SLHRESSFSSRFSNVMGASLPSLRLDR 724
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.133 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,729,313
Number of Sequences: 59808
Number of extensions: 342050
Number of successful extensions: 957
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 953
Number of HSP's gapped (non-prelim): 13
length of query: 243
length of database: 16,821,457
effective HSP length: 80
effective length of query: 163
effective length of database: 12,036,817
effective search space: 1962001171
effective search space used: 1962001171
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)
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