GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000361-TA|BGIBMGA000361-PA|IPR009057|Homeodomain-like
         (243 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749...    30   2.0  
11_06_0346 - 22549699-22549721,22549857-22549999,22550100-225521...    29   3.4  
08_02_1416 - 26915306-26915459,26915553-26915668,26915798-269159...    29   4.5  
08_01_0217 + 1738321-1739104,1739683-1739915,1740002-1740292,174...    29   4.5  

>02_05_1052 +
           33770355-33773981,33774217-33774336,33774880-33774996,
           33775322-33775411,33775971-33776078,33776304-33776351
          Length = 1369

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 182 LCKTITVTQKEMNYYPMFVHNKELATVRHLASQRS---YNPLNIPEEFLKPS 230
           + K IT T+K+    P  V ++E++T+R L S  +      +++PE+  +P+
Sbjct: 572 ISKNITFTEKDDRTMPSSVASQEISTIRRLPSDGADSISKNIDLPEKVTRPA 623


>11_06_0346 -
           22549699-22549721,22549857-22549999,22550100-22552175,
           22552305-22552822
          Length = 919

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 9   PDEVQKLEGWTKDEKLSLLYALKTCGSKNIDWIHQNISTKTPEEIIHAIDYYKNLALLEV 68
           PD++ +++ W ++    L+      GS  ID   Q + TK PE I H + Y K LA +++
Sbjct: 608 PDQIVRIK-WLRN----LIVGAAGAGSGMID-SDQTVLTKIPETI-HQLRYLKTLATIDL 660

Query: 69  KPLDKKIKTNTRPCKNPRIPLACWA 93
                K   +    K   +    W+
Sbjct: 661 SEFSVKSVQSLGDLKQLEVLTITWS 685


>08_02_1416 -
           26915306-26915459,26915553-26915668,26915798-26915910,
           26915995-26916130,26916219-26916338,26916472-26916648,
           26916790-26916862,26916948-26917083,26917179-26918055,
           26918138-26918331,26918438-26918620,26918730-26918796,
           26918900-26919092,26919317-26919363,26919478-26919574,
           26919663-26919790,26919905-26920009,26920763-26920879
          Length = 1010

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/46 (28%), Positives = 25/46 (54%)

Query: 38  IDWIHQNISTKTPEEIIHAIDYYKNLALLEVKPLDKKIKTNTRPCK 83
           + W  ++ + KT E+ +  I +Y  + +  VKPL  ++ + T P K
Sbjct: 829 VHWASRSRNGKTGEDHVDIITFYNEVFIPTVKPLLVELGSGTSPNK 874


>08_01_0217 +
           1738321-1739104,1739683-1739915,1740002-1740292,
           1740524-1740616,1740912-1741040,1741522-1741695,
           1741883-1741990,1742073-1742279
          Length = 672

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 6   SPPPDEVQKLEGWTKDEKLSLLYALKTCGSKNIDWIHQNI 45
           SPP D   K++G+TK EK      + T  SK   W+ + I
Sbjct: 253 SPPEDNDDKVDGFTKCEKWIRDDVVDTKESKTTSWLKRFI 292


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.133    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,217,646
Number of Sequences: 37544
Number of extensions: 271840
Number of successful extensions: 579
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 577
Number of HSP's gapped (non-prelim): 5
length of query: 243
length of database: 14,793,348
effective HSP length: 80
effective length of query: 163
effective length of database: 11,789,828
effective search space: 1921741964
effective search space used: 1921741964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)