GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000361-TA|BGIBMGA000361-PA|IPR009057|Homeodomain-like
         (243 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC090999-24|AAK26151.1|  502|Caenorhabditis elegans Hypothetical...    39   0.004
AF016424-8|AAB65328.2|  467|Caenorhabditis elegans Hypothetical ...    29   4.0  
AL022288-4|CAA18365.1|  461|Caenorhabditis elegans Hypothetical ...    28   5.3  
U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF000261-10|AAB52930.1|  639|Caenorhabditis elegans Hypothetical...    27   9.3  

>AC090999-24|AAK26151.1|  502|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.1 protein.
          Length = 502

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 5/109 (4%)

Query: 108 ETSTAIRMIAD-LENIPPALNTDKFDFRKIYLQIANAMDGKPIPDDKYSGLILKKCILET 166
           E STA+  +   L+++   L   +FD +KI  ++ N +  + +P+  ++G +L KCI + 
Sbjct: 147 EISTAVEFLTPYLKDVKKILEASEFD-KKIAKKVLNTIKEREVPEVSFTGRVLPKCIADP 205

Query: 167 ALISKAFIRTSSLKNLCKTITVTQKEMNYYPMFVHNKELATVRHLASQR 215
              S  F       + C T  +    +++Y      ++L+ +   +SQR
Sbjct: 206 KKYSFTFYCNQC--SYCNT-NIDFLNVHFYYEHAKREQLSNLELESSQR 251


>AF016424-8|AAB65328.2|  467|Caenorhabditis elegans Hypothetical
           protein F39G3.2 protein.
          Length = 467

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 52  EIIHAIDYYKNLALLEVKPLDKKIKTNTRPCKNPRIP-LACWAKLLTDTLHYKSLQTETS 110
           ++ + ++YY+NL +L ++P     +  TR   N ++P        +  TL       E  
Sbjct: 209 QVRNLLEYYRNLGILRLRPWPSFGRLPTRLFPNLKLPSFDSSTYRVGHTLAQNLCALEMK 268

Query: 111 TAIRMIADLENI 122
           T I  IAD + +
Sbjct: 269 TEIGAIADFDEV 280


>AL022288-4|CAA18365.1|  461|Caenorhabditis elegans Hypothetical
           protein ZK1025.7 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 51  EEIIHAIDYYKNLALLEVKPLDK--KIKTNTRPCKNPRIPLACWAKLLTDTLHYKSLQTE 108
           E+    +DYY+ L L+E++P     ++ +N  P   P++  + +       L   SL+ +
Sbjct: 198 EDTKKVLDYYEKLGLIELRPWPNIGELSSNISP-MYPKVDESVFIIATHMALQICSLEIK 256

Query: 109 TSTAIRMIADLENI 122
           TS  I  +AD + +
Sbjct: 257 TSLGI--VADFDEV 268


>U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical
           protein F18F11.3 protein.
          Length = 427

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 151 DDKYSGLILKKCILETALISKAFIRTSSLKNLCKTITVTQKEMN 194
           D K   ++LKK   + ALI+     TSS     KT+ +  + MN
Sbjct: 293 DSKSGNVLLKKLPTDDALITVELYATSSKNGKSKTVEMKLRLMN 336


>AF000261-10|AAB52930.1|  639|Caenorhabditis elegans Hypothetical
           protein F19B10.10 protein.
          Length = 639

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 6/84 (7%)

Query: 124 PALNTDKFDFRKIYLQIANAMDGKPIPDDKYSGL--ILKKCILETALISKAFIRTSSLKN 181
           P  N   FD++K++ ++ N +  +P+ +++ S L  +LK+   ET   ++A    + ++ 
Sbjct: 191 PVANDANFDWKKVFTRLRNMLP-EPMTEEEMSPLADVLKR-YFETYPRAQAVGVLNMIEQ 248

Query: 182 LCK-TITVTQKEMNYYP-MFVHNK 203
            CK  I   QK M+  P  F+ N+
Sbjct: 249 FCKMMIPRLQKIMDKRPEWFLPNR 272


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.133    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,551,031
Number of Sequences: 27539
Number of extensions: 268103
Number of successful extensions: 685
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 682
Number of HSP's gapped (non-prelim): 6
length of query: 243
length of database: 12,573,161
effective HSP length: 79
effective length of query: 164
effective length of database: 10,397,580
effective search space: 1705203120
effective search space used: 1705203120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)