Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000360-TA|BGIBMGA000360-PA|IPR007087|Zinc finger,
C2H2-type, IPR003604|Zinc finger, U1-type, IPR002197|Helix-turn-helix,
Fis-type
         (198 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce...    32   0.066
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    27   2.5  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   7.6  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    25   7.6  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    25   10.0 
SPAC343.02 |img1||mitochondrial ribosomal protein subunit L19|Sc...    25   10.0 
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   10.0 

>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 31.9 bits (69), Expect = 0.066
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 76  GGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIE 113
           G + C +C     +  ++L H  GKKHQ NL     +E
Sbjct: 52  GTFECRLCLTTHANENSYLTHTQGKKHQTNLARRQALE 89


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 80  CNVCDCVVKDSINFLDHINGKKHQRNL-GMSMKIERSSLDQVK 121
           C VC+   +      +H N KKH++NL  M+ +I++ + +  K
Sbjct: 272 CMVCNKNFRSQNQLENHENSKKHKKNLRKMNQEIKKHAKEAQK 314


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 94  LDHINGKKHQRNLGMSMKIERSSLDQVKARFAL 126
           ++H+  ++ QRNL +        +++ + RFAL
Sbjct: 234 MEHLRERQEQRNLELQRNGSFEEIERARQRFAL 266


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 61  GKSVVINK-NTPTSQSGGYY--CNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERSS 116
           GK + I K N    +   +Y  C VC+        +  H+  KKH+ NL    K +R+S
Sbjct: 50  GKILSIQKQNEEVQKKAEFYQNCEVCNKKFYSEGAYSSHMASKKHRDNLS---KFQRNS 105


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 80  CNVCDCVVKDSINFLDHINGKKHQRNLGM 108
           CN  +C   ++I F D+ N   HQ   G+
Sbjct: 200 CNEAECENSNAIVFCDNCNTSVHQNCYGI 228


>SPAC343.02 |img1||mitochondrial ribosomal protein subunit
           L19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 182

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 87  VKDSINFLDHINGKKHQRNLGMSMKIERSSLDQVKARFAL 126
           +K   NF   + G KH+  L +  K  RS LD+   RF +
Sbjct: 25  LKRPYNFPKPVPGPKHKDVLSLFEKKCRSVLDEQSERFKM 64


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
          protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 67 NKNTPTSQSGGYYCNVCDCVVKD 89
          N N+PT +S    CN C  ++++
Sbjct: 49 NNNSPTLRSSSVACNTCLKIIRN 71


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 650,563
Number of Sequences: 5004
Number of extensions: 18782
Number of successful extensions: 53
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 7
length of query: 198
length of database: 2,362,478
effective HSP length: 69
effective length of query: 129
effective length of database: 2,017,202
effective search space: 260219058
effective search space used: 260219058
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)