Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000360-TA|BGIBMGA000360-PA|IPR007087|Zinc finger,
C2H2-type, IPR003604|Zinc finger, U1-type, IPR002197|Helix-turn-helix,
Fis-type
         (198 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05760.1 68416.m00647 expressed protein                            136   9e-33
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ...    35   0.043
At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family...    33   0.099
At5g61190.1 68418.m07676 zinc finger protein-related contains Pf...    31   0.40 
At5g22990.1 68418.m02687 zinc finger (C2H2 type) family protein ...    29   2.8  
At2g44140.2 68415.m05491 autophagy 4a (APG4a) identical to autop...    28   3.7  
At2g44140.1 68415.m05490 autophagy 4a (APG4a) identical to autop...    28   3.7  
At3g29330.1 68416.m03683 expressed protein                             28   4.9  
At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein ...    28   4.9  
At2g23080.1 68415.m02752 casein kinase II alpha chain, putative ...    27   6.5  
At4g11550.1 68417.m01852 DC1 domain-containing protein contains ...    27   8.6  
At3g50090.1 68416.m05476 exonuclease family protein contains exo...    27   8.6  

>At3g05760.1 68416.m00647 expressed protein
          Length = 202

 Score =  136 bits (329), Expect = 9e-33
 Identities = 78/191 (40%), Positives = 97/191 (50%), Gaps = 5/191 (2%)

Query: 9   RRKWDKEEFXXXXXXXXXXXXXXXXXXXXXXTPVKRELLKQREYKVDLDSRLGKSVVINK 68
           R+K+D EEF                       PV+R  LK R+Y VDL+SRLGK+ V+  
Sbjct: 15  RKKFDVEEFKERAREREKKESDRSKSRSKG-PPVQRAPLKHRDYHVDLESRLGKTQVVTP 73

Query: 69  NTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERSSLDQVKARF-ALN 127
             P SQ  GY+C VCDCVVKDS N+LDHINGKKHQR LGMSM++ERSSL+QV+ RF  L 
Sbjct: 74  VAPLSQQAGYFCRVCDCVVKDSANYLDHINGKKHQRALGMSMRVERSSLEQVQERFEVLK 133

Query: 128 XXXXXXXXXXXXXDTXXXXXXXXXXXXXXXXXXXXXXXXXXXMENDEIDDTPAPSELAQI 187
                        D                            +  +E +  P   E+A++
Sbjct: 134 KRKAPGTFTEQDLDERIRKQQEEEEELKRQRREKKKEKKKGKVVEEEPEMDP---EVAEM 190

Query: 188 MGFSGFGGSKK 198
           MGF GFG SKK
Sbjct: 191 MGFGGFGSSKK 201


>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM); contains Pfam profile PF00096:
           Zinc finger, C2H2 type
          Length = 613

 Score = 34.7 bits (76), Expect = 0.043
 Identities = 15/66 (22%), Positives = 32/66 (48%)

Query: 54  VDLDSRLGKSVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIE 113
           VD      + + ++ N   S    ++C++C+       N L H NG+KH+ N+ +    +
Sbjct: 200 VDKKDYSKQQIEVDINVGLSNCYPWFCSLCNVKATCQQNLLSHANGRKHRENVELFDATQ 259

Query: 114 RSSLDQ 119
           +  L++
Sbjct: 260 QQQLEK 265



 Score = 31.5 bits (68), Expect = 0.40
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 78  YYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERSSLDQVK 121
           ++C++CD         L H NGKKH+      +K+ER   +Q K
Sbjct: 154 WFCSLCDINATSEQTLLAHANGKKHR------VKVERFDAEQQK 191



 Score = 28.3 bits (60), Expect = 3.7
 Identities = 8/26 (30%), Positives = 17/26 (65%)

Query: 78  YYCNVCDCVVKDSINFLDHINGKKHQ 103
           ++C++C+  +    ++  H+ GKKHQ
Sbjct: 85  WFCSLCNATMTCEQDYFAHVYGKKHQ 110


>At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family
           protein similar to SWISS-PROT:Q15428
          Length = 277

 Score = 33.5 bits (73), Expect = 0.099
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 76  GGYYCNVCDCVVKDSINFLDHINGKKHQRNL 106
           G Y C +C  +  +  N+L H  GK+HQ NL
Sbjct: 50  GSYECKLCLTLHNNEGNYLAHTQGKRHQTNL 80


>At5g61190.1 68418.m07676 zinc finger protein-related contains Pfam
           profile PF04396: Protein of unknown function DUF537,
           weak hit to PF00096: Zinc finger C2H2 type
          Length = 977

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 79  YCNVCDCVVKDSINFLDHINGKKHQRNL-GMSMKIERSS 116
           +C VC       + F  H  GKKH++NL   S K E  S
Sbjct: 683 WCQVCQISCNSKVAFASHTYGKKHRQNLESQSAKNETMS 721



 Score = 31.1 bits (67), Expect = 0.53
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 60  LGKSVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMS 109
           + K V+I      +    + C +C+ V +  I F  H+ GKKH   L  S
Sbjct: 352 MNKKVMIESRAQANAE--FVCLMCNVVCQSQIVFNSHLRGKKHANMLSQS 399



 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 80  CNVCDCVVKDSINFLDHINGKKHQRNL 106
           C VC     ++  + +H  GKKH+ NL
Sbjct: 299 CKVCQISFTNNDTYKNHTYGKKHRNNL 325


>At5g22990.1 68418.m02687 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 324

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 9/80 (11%)

Query: 41  PVKRELLKQREYK---VDLDSRLGKSVVINKNT---PTSQSGGYYCNVCDCVVKDSINFL 94
           P+KR     ++++    D DS  GK +  +  T   P  + G Y C  C+ V   S  F 
Sbjct: 205 PLKRHCRPTKKFENTFSDFDS--GKDIEYDGRTHSLPYEKYGPYTCPKCNSVFDTSQKFA 262

Query: 95  DHINGKKHQRNLGMSMKIER 114
            HI+   H +N  +  K +R
Sbjct: 263 AHIS-SMHYKNESIEEKFKR 281


>At2g44140.2 68415.m05491 autophagy 4a (APG4a) identical to
           autophagy 4a [Arabidopsis thaliana]
           gi|19912143|dbj|BAB88383
          Length = 422

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 64  VVINKNTPTSQSGGYYCNVCDCVVKDSIN 92
           V +NK TP   +  Y+CNV   V  +S++
Sbjct: 327 VTVNKETPDVDTSSYHCNVLRYVPLESLD 355


>At2g44140.1 68415.m05490 autophagy 4a (APG4a) identical to
           autophagy 4a [Arabidopsis thaliana]
           gi|19912143|dbj|BAB88383
          Length = 467

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 64  VVINKNTPTSQSGGYYCNVCDCVVKDSIN 92
           V +NK TP   +  Y+CNV   V  +S++
Sbjct: 372 VTVNKETPDVDTSSYHCNVLRYVPLESLD 400


>At3g29330.1 68416.m03683 expressed protein
          Length = 232

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 80  CNVCDCVVKDSINFLDHINGKKH 102
           C +C+ V    I + DH+ G+KH
Sbjct: 196 CRICNVVCNSDIVYNDHLAGQKH 218


>At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein
           contains Prosite PS00028: Zinc finger, C2H2 type,
           domain; weak similarity to Zinc finger protein T86
           (Swiss-Prot:O00488) [Homo sapiens]
          Length = 198

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 76  GGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSM-KIERSSLD 118
           G +YC  CD    +     DH   KKH++ + M M +   S LD
Sbjct: 56  GQFYCLHCDRYFSNVSVRDDHFKTKKHKKRVNMMMGQAPHSQLD 99


>At2g23080.1 68415.m02752 casein kinase II alpha chain, putative
           identical to probable casein kinase II, alpha chain
           [Arabidopsis thaliana] SWISS-PROT:O64817; similar to
           casein kinase II, alpha chain 1 [Arabidopsis thaliana]
           SWISS-PROT:Q08467
          Length = 333

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 51  EYKVDLDSRLGKSVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSM 110
           +Y++DLD +L    ++ ++ P   S     +    V  ++I+FLD +    HQ  L    
Sbjct: 255 KYQLDLDPQL--EALVGRHVPKPWSKFINADNQHLVSPEAIDFLDKLLQYDHQDRLTARE 312

Query: 111 KIERSSLDQVKA 122
            ++     QVKA
Sbjct: 313 AMDHPYFAQVKA 324


>At4g11550.1 68417.m01852 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 668

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 5/37 (13%)

Query: 75  SGGYYCNVCDCV-----VKDSINFLDHINGKKHQRNL 106
           SGGYYC  C  +     V+DS  +++H +   H   L
Sbjct: 38  SGGYYCESCSFLVHRKCVEDSSEYIEHPSHSVHPLKL 74


>At3g50090.1 68416.m05476 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 322

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 47  LKQREYKVDLDSRL-GKSVVINKNTPTSQSGGYYCNVCDCVVKDSIN-FLDHINGKKHQR 104
           L   E K DL  +   K+  I+   P    GGYYC V         N   +++NG K   
Sbjct: 245 LSSEELKKDLALKFFPKNFTIDVK-PAKTQGGYYCAVVIFGSSVEANQAFENVNGYKETD 303

Query: 105 NLGMSMKIERSSLDQVKAR 123
           + G+  K+   S+     R
Sbjct: 304 SSGLPQKLISCSISTFYVR 322


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,445,165
Number of Sequences: 28952
Number of extensions: 100188
Number of successful extensions: 324
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 18
length of query: 198
length of database: 12,070,560
effective HSP length: 77
effective length of query: 121
effective length of database: 9,841,256
effective search space: 1190791976
effective search space used: 1190791976
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)