GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000360-TA|BGIBMGA000360-PA|IPR007087|Zinc finger,
C2H2-type, IPR003604|Zinc finger, U1-type, IPR002197|Helix-turn-helix,
Fis-type
         (198 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   2.2  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    22   3.8  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   3.8  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   3.8  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   8.8  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 47  LKQREYKVDLDSRLGKSVVINKNTPTSQSGGYYCNVCDCVVKDSINFLD 95
           L    ++V    R+G  V +++     Q+G    N+ D  +KD++   D
Sbjct: 536 LHGHSFRVVAMERVGSHVNVSEILKMDQNGQIKRNLVDAPLKDTVTVPD 584


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 95  DHINGKKHQRNLGMSMKIERSSL 117
           D  NGKK+Q+  G+  K+  + L
Sbjct: 171 DDTNGKKNQKKRGIFPKVATNIL 193


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 95  DHINGKKHQRNLGMSMKIERSSL 117
           D  NGKK+Q+  G+  K+  + L
Sbjct: 327 DDTNGKKNQKKRGIFPKVATNIL 349


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 48  KQREYKVDLDSRLGKSVVINKNTPTSQSGGYYCNVCD 84
           K++ +KV+ DS    S V  +   +S+   + C VC+
Sbjct: 105 KRKTWKVEEDSPSPTSSVSPEVKDSSRDRPFTCEVCN 141


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 6/9 (66%), Positives = 9/9 (100%)

Query: 82  VCDCVVKDS 90
           +CDCVVK++
Sbjct: 273 LCDCVVKEA 281


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,676
Number of Sequences: 317
Number of extensions: 991
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 198
length of database: 114,650
effective HSP length: 54
effective length of query: 144
effective length of database: 97,532
effective search space: 14044608
effective search space used: 14044608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)