GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000360-TA|BGIBMGA000360-PA|IPR007087|Zinc finger,
C2H2-type, IPR003604|Zinc finger, U1-type, IPR002197|Helix-turn-helix,
Fis-type
         (198 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0561 + 34728428-34728439,34728529-34728615,34728729-347287...   138   4e-33
09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419     36   0.022
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    31   0.48 
09_04_0155 - 15185985-15186755,15187049-15187236,15187479-151875...    29   1.9  
10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393     29   2.5  
09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351     28   4.4  

>03_06_0561 +
           34728428-34728439,34728529-34728615,34728729-34728750,
           34728843-34728925,34729139-34729171,34729468-34729546,
           34729642-34729694,34729931-34729991,34730168-34730250,
           34730418-34730513
          Length = 202

 Score =  138 bits (333), Expect = 4e-33
 Identities = 76/191 (39%), Positives = 99/191 (51%), Gaps = 2/191 (1%)

Query: 9   RRKWDKEEFXXXXXXXXXXXXXXXXXXXXXXTPVKRELLKQREYKVDLDSRLGKSVVINK 68
           RRK+DKEE+                       PV+R+ LK R+Y+VDL+SRLGK+ V+  
Sbjct: 13  RRKFDKEEYLERARQREREEKEEARKGKEKGPPVQRQPLKHRDYEVDLESRLGKTQVVTP 72

Query: 69  NTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERSSLDQVKARF-ALN 127
             P SQ  GYYC VC+CVVKDS N+LDHINGKKHQR LGMSM++ER+SL+QV+ RF +L 
Sbjct: 73  IAPLSQQAGYYCKVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQKRFESLK 132

Query: 128 XXXXXXXXXXXXXDTXXXXXXXXXXXXXXXXXXXXXXXXXXXMENDEIDDTPAPSELAQI 187
                        D                               +E ++   P ++A +
Sbjct: 133 KRKDPGSFSEQDLDERILKQQQEDEERKRQRKEKKKEKKKELAAQNEPEEDIDP-DVAAM 191

Query: 188 MGFSGFGGSKK 198
           MGF GF  SKK
Sbjct: 192 MGFGGFRSSKK 202


>09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419
          Length = 396

 Score = 35.9 bits (79), Expect = 0.022
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 57  DSRLGKSVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSM 110
           D    KSV I+  T   Q   Y+C VC           DH++GKKH + L + +
Sbjct: 342 DGSSSKSVKISA-TMDKQKATYFCEVCSLKCTSQRMLADHLSGKKHIKQLELQL 394



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 80  CNVCDCVVKDSINFLDHINGKKHQRNL-GMSMKIERSSL 117
           C VC+       N  DH  G+KHQ  + G+ +K + +++
Sbjct: 104 CAVCEVQTSSERNLRDHYGGQKHQSKVAGLELKAKTATV 142


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 71  PTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNL 106
           P      Y C +C  +  +  N+L H  GK+HQ NL
Sbjct: 75  PLDFVSSYECKLCLTLHNNEGNYLAHTQGKRHQTNL 110


>09_04_0155 -
           15185985-15186755,15187049-15187236,15187479-15187517,
           15187741-15187768
          Length = 341

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 80  CNVCDCVVKDSINFLDHINGKKHQRN 105
           C++C+       +F  H+ GKKHQ N
Sbjct: 166 CSICNISCNGECDFDTHLKGKKHQAN 191



 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 66  INKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERS 115
           + K+ P S    + C VC        N  DH  G+KHQ  +    K  ++
Sbjct: 102 VQKSMPPS---AWSCAVCQVRTTSERNLRDHCGGQKHQSKVAALEKTTKA 148


>10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393
          Length = 278

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 80  CNVCDCVVKDSINFLDHINGKKHQRNLGMS 109
           C +CD ++   +N   H  GK+H   L +S
Sbjct: 230 CQLCDVLLASELNVAQHYAGKQHLHRLRLS 259


>09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351
          Length = 415

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 67  NKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQ 103
           N +    Q+  YYC++C+           H+ GK+H+
Sbjct: 371 NSSAHHHQNRMYYCDICEVRCSSEKMMASHLAGKRHR 407


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,204,019
Number of Sequences: 37544
Number of extensions: 117583
Number of successful extensions: 255
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 239
Number of HSP's gapped (non-prelim): 16
length of query: 198
length of database: 14,793,348
effective HSP length: 78
effective length of query: 120
effective length of database: 11,864,916
effective search space: 1423789920
effective search space used: 1423789920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)