GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000360-TA|BGIBMGA000360-PA|IPR007087|Zinc finger,
C2H2-type, IPR003604|Zinc finger, U1-type, IPR002197|Helix-turn-helix,
Fis-type
         (198 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41186| Best HMM Match : No HMM Matches (HMM E-Value=.)             163   7e-41
SB_50862| Best HMM Match : zf-C2H2 (HMM E-Value=3)                     32   0.28 
SB_52059| Best HMM Match : WCOR413 (HMM E-Value=3.1)                   32   0.36 
SB_57011| Best HMM Match : BEX (HMM E-Value=6.7)                       32   0.36 
SB_47678| Best HMM Match : zf-U1 (HMM E-Value=0.0086)                  30   1.1  
SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)                    30   1.1  
SB_2261| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_8065| Best HMM Match : 3_5_exonuc (HMM E-Value=1.2e-07)             30   1.5  
SB_45200| Best HMM Match : 3_5_exonuc (HMM E-Value=2.3e-07)            29   1.9  
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)               29   1.9  
SB_36598| Best HMM Match : E-MAP-115 (HMM E-Value=0.092)               29   3.4  
SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043)                  29   3.4  

>SB_41186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score =  163 bits (397), Expect = 7e-41
 Identities = 77/127 (60%), Positives = 92/127 (72%), Gaps = 1/127 (0%)

Query: 2   SMRPDDHRRKWDKEEFXXXXXXXXXXXXXXXXXXXXXX-TPVKRELLKQREYKVDLDSRL 60
           S + D+ RR WDKEE+                        PVKRELLK+R+Y+VDL++ L
Sbjct: 5   SGKSDNFRRTWDKEEYEKKAKDRLKEEEEGESSIEKRNGPPVKRELLKKRDYEVDLETNL 64

Query: 61  GKSVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERSSLDQV 120
           GKS+VI K++  SQ+GGYYCNVCDCVVKDSINFLDHINGKKHQRN+GMSM++ERSSLDQV
Sbjct: 65  GKSIVITKSSSMSQTGGYYCNVCDCVVKDSINFLDHINGKKHQRNMGMSMRVERSSLDQV 124

Query: 121 KARFALN 127
           K RF  N
Sbjct: 125 KRRFETN 131


>SB_50862| Best HMM Match : zf-C2H2 (HMM E-Value=3)
          Length = 131

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 80  CNVCDCVVKDSINFLDHINGKKHQRNL 106
           C +C+  +   +  L H+ GKKHQ++L
Sbjct: 26  CTICNVEIVSEVYLLSHLRGKKHQQSL 52


>SB_52059| Best HMM Match : WCOR413 (HMM E-Value=3.1)
          Length = 329

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 52  YKVD--LDSRLGKSVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKK 101
           YK D  L  R+GKSV++ K   T+ S     + CDC + DS   L  I GKK
Sbjct: 281 YKEDPVLSKRMGKSVLVQKWKETTLS---IRSCCDCEIYDSTKQLLGIFGKK 329


>SB_57011| Best HMM Match : BEX (HMM E-Value=6.7)
          Length = 273

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 52  YKVD--LDSRLGKSVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKK 101
           YK D  L  R+GKSV++ K   T+ S     + CDC + DS   L  I GKK
Sbjct: 225 YKEDPVLSKRMGKSVLVQKWKETTLS---IRSCCDCEIYDSTKQLLGIFGKK 273


>SB_47678| Best HMM Match : zf-U1 (HMM E-Value=0.0086)
          Length = 502

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 72  TSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNL 106
           T QS  Y+C +CD     ++ F  H+ G KH+ N+
Sbjct: 274 TGQSPRYHCELCDSKFDHNLKF-PHLVGAKHRFNV 307


>SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)
          Length = 844

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 8/29 (27%), Positives = 17/29 (58%)

Query: 77  GYYCNVCDCVVKDSINFLDHINGKKHQRN 105
           G+ C +C   + +  + + H+  +KHQ+N
Sbjct: 590 GFNCRLCKTFIMNGADVMKHVKARKHQKN 618


>SB_2261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 572

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 56  LDSRLGK-SVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIER 114
           LDS  G+   V    +       +YC  CD   K +    +H   +KH+ N+ + +K E 
Sbjct: 276 LDSEFGRVDDVTGSQSDEEDVEQFYCVACDKSFKSTKALANHEKSRKHKENVAL-IKEEL 334

Query: 115 SSLD 118
           + +D
Sbjct: 335 AKMD 338


>SB_8065| Best HMM Match : 3_5_exonuc (HMM E-Value=1.2e-07)
          Length = 317

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 47  LKQREYKVDLDSRLGKSVVINKNTPTSQSGGYY--CNVCDCVVKDSINFLDHINGKKHQR 104
           LKQR +K  L  + G+  ++    P  +       C  C    K     L+HI  K HQ 
Sbjct: 241 LKQRLHKSGLVRKTGEQHLLETGVPMGKKAEAMVSCKSCGKKYKSKAALLEHIEVKSHQS 300

Query: 105 NLGMSMKIERSSLDQ 119
           ++    K  R+ + +
Sbjct: 301 HVVDDTKRRRNHIPE 315


>SB_45200| Best HMM Match : 3_5_exonuc (HMM E-Value=2.3e-07)
          Length = 347

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 47  LKQREYKVDLDSRLGKSVVINKNTPTSQSGGYY--CNVCDCVVKDSINFLDHINGKKHQR 104
           LKQR +K  L  + G+  +I    P  +       C  C    K     L+HI  K HQ 
Sbjct: 225 LKQRLHKSGLVRKTGEQHLIETGVPMGKKAEAMVSCKSCGKKYKSKAALLEHIEVKSHQS 284

Query: 105 NL 106
           ++
Sbjct: 285 HV 286


>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
          Length = 523

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 80  CNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERSSL 117
           C  C+       N  +H+NGKKHQ  L  +   ++  L
Sbjct: 320 CKTCNMYFNSPHNKREHLNGKKHQMMLNTAAAEKKEKL 357


>SB_36598| Best HMM Match : E-MAP-115 (HMM E-Value=0.092)
          Length = 783

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)

Query: 84  DCVVKDSINFLDHINGKKHQRNLGMSMKIERSSLDQVK 121
           DC   + IN +D+++G  +QR+   S   E+ S DQ+K
Sbjct: 223 DCDELEMINAIDNVSGSVNQRS---SCTFEKRSADQIK 257


>SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043)
          Length = 831

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 3/27 (11%)

Query: 171 ENDEIDDTPAPSELAQIMGFSGFGGSK 197
           +N + +DTP   ++A +MGFSGFG  K
Sbjct: 585 DNQKPEDTP---DIAAMMGFSGFGKKK 608


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,822,108
Number of Sequences: 59808
Number of extensions: 140781
Number of successful extensions: 368
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 360
Number of HSP's gapped (non-prelim): 13
length of query: 198
length of database: 16,821,457
effective HSP length: 79
effective length of query: 119
effective length of database: 12,096,625
effective search space: 1439498375
effective search space used: 1439498375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)