GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000360-TA|BGIBMGA000360-PA|IPR007087|Zinc finger,
C2H2-type, IPR003604|Zinc finger, U1-type, IPR002197|Helix-turn-helix,
Fis-type
         (198 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L17337-4|ABM74561.1|  217|Caenorhabditis elegans Hypothetical pr...   144   4e-35
Z68297-1|CAA92593.2|  222|Caenorhabditis elegans Hypothetical pr...    33   0.14 
AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical ...    30   0.97 
Z35663-13|CAA84729.1|  234|Caenorhabditis elegans Hypothetical p...    30   1.3  
AL032654-9|CAA21720.1|  404|Caenorhabditis elegans Hypothetical ...    30   1.3  
AL021171-3|CAB54258.1|  749|Caenorhabditis elegans Hypothetical ...    29   1.7  
AL021171-2|CAA15957.1|  747|Caenorhabditis elegans Hypothetical ...    29   1.7  
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z81589-3|CAB04719.1|  256|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U97550-4|AAK18978.2|  773|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U13642-2|AAG00042.2|  430|Caenorhabditis elegans Abnormal growth...    27   6.8  
AY052773-1|AAL14112.1|  430|Caenorhabditis elegans tRNA isopente...    27   6.8  

>L17337-4|ABM74561.1|  217|Caenorhabditis elegans Hypothetical
           protein ZK686.4 protein.
          Length = 217

 Score =  144 bits (349), Expect = 4e-35
 Identities = 79/203 (38%), Positives = 105/203 (51%), Gaps = 11/203 (5%)

Query: 7   DHRRKWDKEEFXXXXXXXXXXXXXXXXXXXXXXTP----VKRELLKQREYKVDLDSRLGK 62
           +HRR WD++E+                            VKRE+L+ REYKVDLDS++GK
Sbjct: 15  NHRRTWDEKEYSLAAQQRLLDEKEAEDIRLGKKKKDEPKVKREMLQAREYKVDLDSKVGK 74

Query: 63  SVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERSSLDQVKA 122
           SVVI K TP++++GG+YC+VCDCVVKDSINFLDHINGK HQRN+GMSMK ++S++  V+ 
Sbjct: 75  SVVITKATPSAETGGFYCDVCDCVVKDSINFLDHINGKNHQRNIGMSMKTKKSTVADVRE 134

Query: 123 RFAL-------NXXXXXXXXXXXXXDTXXXXXXXXXXXXXXXXXXXXXXXXXXXMENDEI 175
           RF L                                                   E+D+ 
Sbjct: 135 RFKLMKDKKEREKKEAQVEQLLEDVQEEEARMADFKKDKKTDNRKRKRDTRKDEEEDDDE 194

Query: 176 DDTPAPSELAQIMGFSGFGGSKK 198
           DD+    E+  +MGFSGF  SK+
Sbjct: 195 DDSGLDPEIRAMMGFSGFSTSKR 217


>Z68297-1|CAA92593.2|  222|Caenorhabditis elegans Hypothetical
           protein F11A10.2 protein.
          Length = 222

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 76  GGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERS 115
           G Y C +C  +  +  ++L H  GKKHQ NL      E+S
Sbjct: 52  GTYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEQS 91


>AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical
           protein Y95B8A.7 protein.
          Length = 608

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 60  LGKSVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERSSLDQ 119
           +G+  V  +   T +   ++C +CDC   D      HI G++H+  +    KI+ + +  
Sbjct: 157 VGEEHVTEERDATGKLVQFHCKLCDCKFSDPNAKEIHIKGRRHR--VSYRQKIDPTLVVD 214

Query: 120 VK 121
           VK
Sbjct: 215 VK 216


>Z35663-13|CAA84729.1|  234|Caenorhabditis elegans Hypothetical
           protein T04A8.10 protein.
          Length = 234

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 75  SGGYYCNVCDCVVKDSINFLDHINGKKHQRNL 106
           +G   C VC+  +K  I +  H+NGKKH+ ++
Sbjct: 13  NGNIQCLVCNAEIKPKI-WTAHVNGKKHRDSI 43


>AL032654-9|CAA21720.1|  404|Caenorhabditis elegans Hypothetical
           protein Y52B11A.9 protein.
          Length = 404

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 78  YYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERSSLDQVKARFALN 127
           ++C +C    +D+  F  H+  + HQR L +  +   S L Q    F  N
Sbjct: 26  FFCQMCQKQCRDANGFKCHLTSEAHQRQLLLFAENSNSYLRQFSNDFEKN 75


>AL021171-3|CAB54258.1|  749|Caenorhabditis elegans Hypothetical
           protein H04D03.2b protein.
          Length = 749

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/24 (50%), Positives = 18/24 (75%)

Query: 173 DEIDDTPAPSELAQIMGFSGFGGS 196
           D +D+ PAP+ LA+ M F+ FGG+
Sbjct: 398 DFLDEEPAPNLLAEPMDFTEFGGN 421


>AL021171-2|CAA15957.1|  747|Caenorhabditis elegans Hypothetical
           protein H04D03.2a protein.
          Length = 747

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/24 (50%), Positives = 18/24 (75%)

Query: 173 DEIDDTPAPSELAQIMGFSGFGGS 196
           D +D+ PAP+ LA+ M F+ FGG+
Sbjct: 398 DFLDEEPAPNLLAEPMDFTEFGGN 421


>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
            protein ZC123.3 protein.
          Length = 1623

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 73   SQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIE 113
            S+SG  +C +CD      ++  DH+  ++H   L  ++K E
Sbjct: 1412 SRSGELHCEICDKTFATRLSLQDHLFAEQHIEFLRNNLKRE 1452


>Z81589-3|CAB04719.1|  256|Caenorhabditis elegans Hypothetical
           protein T08G5.7 protein.
          Length = 256

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 68  KNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQR 104
           K+  T  SG + C VC+ V+       +H+N +KH++
Sbjct: 67  KSLTTKGSGAWKCPVCELVIPTEKGLKNHMN-QKHRK 102


>U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical
           protein C16A3.4 protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 79  YCNVCDCVVKDSINFLDHINGKKHQRN 105
           YC  C   +K      DH+  KKH+ N
Sbjct: 72  YCKACRKSIKSENAMTDHVASKKHKEN 98


>U97550-4|AAK18978.2|  773|Caenorhabditis elegans Hypothetical
           protein T20F7.1 protein.
          Length = 773

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 53  KVDLDSRLGKSVVINKNTPTSQSGGYYCNVCDCVVK-DSI 91
           K  L+S + K     KN   S+S G  C V  C ++ DSI
Sbjct: 285 KALLESHIKKHTTTGKNEVMSESSGLICPVEHCTIRCDSI 324


>U13642-2|AAG00042.2|  430|Caenorhabditis elegans Abnormal growth
           rate protein 1 protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 80  CNVCDCVVKDSINFLDHINGKKHQRN 105
           C +C+  +    N+  HI+GKKH+ +
Sbjct: 394 CEICNISMTGKDNWQKHIDGKKHKHH 419


>AY052773-1|AAL14112.1|  430|Caenorhabditis elegans tRNA isopentenyl
           transferase protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 80  CNVCDCVVKDSINFLDHINGKKHQRN 105
           C +C+  +    N+  HI+GKKH+ +
Sbjct: 394 CEICNISMTGKDNWQKHIDGKKHKHH 419


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,609,481
Number of Sequences: 27539
Number of extensions: 108142
Number of successful extensions: 246
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 17
length of query: 198
length of database: 12,573,161
effective HSP length: 78
effective length of query: 120
effective length of database: 10,425,119
effective search space: 1251014280
effective search space used: 1251014280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)