Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000360-TA|BGIBMGA000360-PA|IPR007087|Zinc finger,
C2H2-type, IPR003604|Zinc finger, U1-type, IPR002197|Helix-turn-helix,
Fis-type
(198 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05760.1 68416.m00647 expressed protein 136 9e-33
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 35 0.043
At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family... 33 0.099
At5g61190.1 68418.m07676 zinc finger protein-related contains Pf... 31 0.40
At5g22990.1 68418.m02687 zinc finger (C2H2 type) family protein ... 29 2.8
At2g44140.2 68415.m05491 autophagy 4a (APG4a) identical to autop... 28 3.7
At2g44140.1 68415.m05490 autophagy 4a (APG4a) identical to autop... 28 3.7
At3g29330.1 68416.m03683 expressed protein 28 4.9
At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein ... 28 4.9
At2g23080.1 68415.m02752 casein kinase II alpha chain, putative ... 27 6.5
At4g11550.1 68417.m01852 DC1 domain-containing protein contains ... 27 8.6
At3g50090.1 68416.m05476 exonuclease family protein contains exo... 27 8.6
>At3g05760.1 68416.m00647 expressed protein
Length = 202
Score = 136 bits (329), Expect = 9e-33
Identities = 78/191 (40%), Positives = 97/191 (50%), Gaps = 5/191 (2%)
Query: 9 RRKWDKEEFXXXXXXXXXXXXXXXXXXXXXXTPVKRELLKQREYKVDLDSRLGKSVVINK 68
R+K+D EEF PV+R LK R+Y VDL+SRLGK+ V+
Sbjct: 15 RKKFDVEEFKERAREREKKESDRSKSRSKG-PPVQRAPLKHRDYHVDLESRLGKTQVVTP 73
Query: 69 NTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERSSLDQVKARF-ALN 127
P SQ GY+C VCDCVVKDS N+LDHINGKKHQR LGMSM++ERSSL+QV+ RF L
Sbjct: 74 VAPLSQQAGYFCRVCDCVVKDSANYLDHINGKKHQRALGMSMRVERSSLEQVQERFEVLK 133
Query: 128 XXXXXXXXXXXXXDTXXXXXXXXXXXXXXXXXXXXXXXXXXXMENDEIDDTPAPSELAQI 187
D + +E + P E+A++
Sbjct: 134 KRKAPGTFTEQDLDERIRKQQEEEEELKRQRREKKKEKKKGKVVEEEPEMDP---EVAEM 190
Query: 188 MGFSGFGGSKK 198
MGF GFG SKK
Sbjct: 191 MGFGGFGSSKK 201
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 34.7 bits (76), Expect = 0.043
Identities = 15/66 (22%), Positives = 32/66 (48%)
Query: 54 VDLDSRLGKSVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIE 113
VD + + ++ N S ++C++C+ N L H NG+KH+ N+ + +
Sbjct: 200 VDKKDYSKQQIEVDINVGLSNCYPWFCSLCNVKATCQQNLLSHANGRKHRENVELFDATQ 259
Query: 114 RSSLDQ 119
+ L++
Sbjct: 260 QQQLEK 265
Score = 31.5 bits (68), Expect = 0.40
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 78 YYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIERSSLDQVK 121
++C++CD L H NGKKH+ +K+ER +Q K
Sbjct: 154 WFCSLCDINATSEQTLLAHANGKKHR------VKVERFDAEQQK 191
Score = 28.3 bits (60), Expect = 3.7
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 78 YYCNVCDCVVKDSINFLDHINGKKHQ 103
++C++C+ + ++ H+ GKKHQ
Sbjct: 85 WFCSLCNATMTCEQDYFAHVYGKKHQ 110
>At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family
protein similar to SWISS-PROT:Q15428
Length = 277
Score = 33.5 bits (73), Expect = 0.099
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 76 GGYYCNVCDCVVKDSINFLDHINGKKHQRNL 106
G Y C +C + + N+L H GK+HQ NL
Sbjct: 50 GSYECKLCLTLHNNEGNYLAHTQGKRHQTNL 80
>At5g61190.1 68418.m07676 zinc finger protein-related contains Pfam
profile PF04396: Protein of unknown function DUF537,
weak hit to PF00096: Zinc finger C2H2 type
Length = 977
Score = 31.5 bits (68), Expect = 0.40
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 79 YCNVCDCVVKDSINFLDHINGKKHQRNL-GMSMKIERSS 116
+C VC + F H GKKH++NL S K E S
Sbjct: 683 WCQVCQISCNSKVAFASHTYGKKHRQNLESQSAKNETMS 721
Score = 31.1 bits (67), Expect = 0.53
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 60 LGKSVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMS 109
+ K V+I + + C +C+ V + I F H+ GKKH L S
Sbjct: 352 MNKKVMIESRAQANAE--FVCLMCNVVCQSQIVFNSHLRGKKHANMLSQS 399
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 80 CNVCDCVVKDSINFLDHINGKKHQRNL 106
C VC ++ + +H GKKH+ NL
Sbjct: 299 CKVCQISFTNNDTYKNHTYGKKHRNNL 325
>At5g22990.1 68418.m02687 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 324
Score = 28.7 bits (61), Expect = 2.8
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 41 PVKRELLKQREYK---VDLDSRLGKSVVINKNT---PTSQSGGYYCNVCDCVVKDSINFL 94
P+KR ++++ D DS GK + + T P + G Y C C+ V S F
Sbjct: 205 PLKRHCRPTKKFENTFSDFDS--GKDIEYDGRTHSLPYEKYGPYTCPKCNSVFDTSQKFA 262
Query: 95 DHINGKKHQRNLGMSMKIER 114
HI+ H +N + K +R
Sbjct: 263 AHIS-SMHYKNESIEEKFKR 281
>At2g44140.2 68415.m05491 autophagy 4a (APG4a) identical to
autophagy 4a [Arabidopsis thaliana]
gi|19912143|dbj|BAB88383
Length = 422
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 64 VVINKNTPTSQSGGYYCNVCDCVVKDSIN 92
V +NK TP + Y+CNV V +S++
Sbjct: 327 VTVNKETPDVDTSSYHCNVLRYVPLESLD 355
>At2g44140.1 68415.m05490 autophagy 4a (APG4a) identical to
autophagy 4a [Arabidopsis thaliana]
gi|19912143|dbj|BAB88383
Length = 467
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 64 VVINKNTPTSQSGGYYCNVCDCVVKDSIN 92
V +NK TP + Y+CNV V +S++
Sbjct: 372 VTVNKETPDVDTSSYHCNVLRYVPLESLD 400
>At3g29330.1 68416.m03683 expressed protein
Length = 232
Score = 27.9 bits (59), Expect = 4.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 80 CNVCDCVVKDSINFLDHINGKKH 102
C +C+ V I + DH+ G+KH
Sbjct: 196 CRICNVVCNSDIVYNDHLAGQKH 218
>At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein
contains Prosite PS00028: Zinc finger, C2H2 type,
domain; weak similarity to Zinc finger protein T86
(Swiss-Prot:O00488) [Homo sapiens]
Length = 198
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 76 GGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSM-KIERSSLD 118
G +YC CD + DH KKH++ + M M + S LD
Sbjct: 56 GQFYCLHCDRYFSNVSVRDDHFKTKKHKKRVNMMMGQAPHSQLD 99
>At2g23080.1 68415.m02752 casein kinase II alpha chain, putative
identical to probable casein kinase II, alpha chain
[Arabidopsis thaliana] SWISS-PROT:O64817; similar to
casein kinase II, alpha chain 1 [Arabidopsis thaliana]
SWISS-PROT:Q08467
Length = 333
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 51 EYKVDLDSRLGKSVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSM 110
+Y++DLD +L ++ ++ P S + V ++I+FLD + HQ L
Sbjct: 255 KYQLDLDPQL--EALVGRHVPKPWSKFINADNQHLVSPEAIDFLDKLLQYDHQDRLTARE 312
Query: 111 KIERSSLDQVKA 122
++ QVKA
Sbjct: 313 AMDHPYFAQVKA 324
>At4g11550.1 68417.m01852 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 668
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 75 SGGYYCNVCDCV-----VKDSINFLDHINGKKHQRNL 106
SGGYYC C + V+DS +++H + H L
Sbjct: 38 SGGYYCESCSFLVHRKCVEDSSEYIEHPSHSVHPLKL 74
>At3g50090.1 68416.m05476 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 322
Score = 27.1 bits (57), Expect = 8.6
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 47 LKQREYKVDLDSRL-GKSVVINKNTPTSQSGGYYCNVCDCVVKDSIN-FLDHINGKKHQR 104
L E K DL + K+ I+ P GGYYC V N +++NG K
Sbjct: 245 LSSEELKKDLALKFFPKNFTIDVK-PAKTQGGYYCAVVIFGSSVEANQAFENVNGYKETD 303
Query: 105 NLGMSMKIERSSLDQVKAR 123
+ G+ K+ S+ R
Sbjct: 304 SSGLPQKLISCSISTFYVR 322
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.133 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,445,165
Number of Sequences: 28952
Number of extensions: 100188
Number of successful extensions: 324
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 18
length of query: 198
length of database: 12,070,560
effective HSP length: 77
effective length of query: 121
effective length of database: 9,841,256
effective search space: 1190791976
effective search space used: 1190791976
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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