Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000359-TA|BGIBMGA000359-PA|undefined
         (807 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    27   0.39 
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    26   0.89 
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    24   4.7  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    24   4.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   4.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   4.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   4.7  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 0.39
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 110 VRHTRHDQFPVIPDEIYSMYENGSYYSVTSP 140
           +RH  H Q+   PD  +  Y N +YY++  P
Sbjct: 70  IRH--HGQWNYSPDNHFEQYPNPTYYNLADP 98


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 26.2 bits (55), Expect = 0.89
 Identities = 10/25 (40%), Positives = 19/25 (76%), Gaps = 2/25 (8%)

Query: 775 DTSFECFSSEPAAILARHGAPPSPV 799
           +TSFE  S +P+ +++ + +PPSP+
Sbjct: 116 ETSFE--SGKPSGVISTNTSPPSPI 138


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 362 PHLSESAASCSSEIDDLSWLLSDTNLRSKP 391
           PH++E   S +S ID+ +  +  T +R +P
Sbjct: 56  PHVNEYVESLASIIDEAATKVHGTTVRVRP 85


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 362 PHLSESAASCSSEIDDLSWLLSDTNLRSKP 391
           PH++E   S +S ID+ +  +  T +R +P
Sbjct: 370 PHVNEYVESLASIIDEAATKVHGTTVRVRP 399


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 362 PHLSESAASCSSEIDDLSWLLSDTNLRSKP 391
           PH++E   S +S ID+ +  +  T +R +P
Sbjct: 603 PHVNEYVESLASIIDEAATKVHGTTVRVRP 632


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 362 PHLSESAASCSSEIDDLSWLLSDTNLRSKP 391
           PH++E   S +S ID+ +  +  T +R +P
Sbjct: 603 PHVNEYVESLASIIDEAATKVHGTTVRVRP 632


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 14/43 (32%), Positives = 18/43 (41%)

Query: 311 TKGTIANQRPKIPELQRRTSTSSFSGPEVTNSPPTQMDMTGYA 353
           T+ T+ N R     +QR  S S    P V N P      T Y+
Sbjct: 256 TRTTLKNNRASPYPMQRPKSASLSPPPHVYNPPDHIQQATPYS 298


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.129    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,119
Number of Sequences: 317
Number of extensions: 6378
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 7
length of query: 807
length of database: 114,650
effective HSP length: 62
effective length of query: 745
effective length of database: 94,996
effective search space: 70772020
effective search space used: 70772020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)