Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000359-TA|BGIBMGA000359-PA|undefined
(807 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5276| Best HMM Match : DNA_RNApol_7kD (HMM E-Value=1.1) 77 4e-14
SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.30
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.52
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 2.1
SB_3218| Best HMM Match : Ribosomal_S25 (HMM E-Value=0.65) 32 2.1
SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.7
SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0) 31 3.7
SB_36309| Best HMM Match : FeS (HMM E-Value=8) 31 3.7
SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05) 31 4.9
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 4.9
SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3) 30 6.4
SB_54392| Best HMM Match : G6PD_N (HMM E-Value=1.3) 30 8.5
SB_24377| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 8.5
SB_16002| Best HMM Match : Clathrin (HMM E-Value=1.1) 30 8.5
SB_8560| Best HMM Match : E-MAP-115 (HMM E-Value=6.4) 30 8.5
SB_34035| Best HMM Match : Ku_C (HMM E-Value=8.8) 30 8.5
>SB_5276| Best HMM Match : DNA_RNApol_7kD (HMM E-Value=1.1)
Length = 886
Score = 77.4 bits (182), Expect = 4e-14
Identities = 38/103 (36%), Positives = 65/103 (63%), Gaps = 7/103 (6%)
Query: 19 LQRKKCNTEQEIADLKASLWALGNTATAPSGLQLLMSLSNGYLEDSVLVHVVRLVKYCPV 78
+Q + +T +++ ++KA+LWALG+ ++ G+ LLM E+ V+ +VR+ +
Sbjct: 103 IQTLEPDTREKVIEIKAALWALGHCGSSNWGITLLM-------EEDVIPDIVRMAEESEN 155
Query: 79 YSIRATAFYVLGLIGCTYDGANLLTELGWLCVRHTRHDQFPVI 121
++IR T FYVLGLI T GA++L +L W +RH +Q+PV+
Sbjct: 156 FAIRGTCFYVLGLIAKTRQGADILQDLEWESIRHMGEEQWPVL 198
>SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 34.7 bits (76), Expect = 0.30
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 119 PVIPDEIYSMYENGSYYSVTSPDYRANAYDTETSEHSDHTDQSATESLQSDYKH----AT 174
PV + S G+ + PD + Y S+ S++ SAT+S++ H +
Sbjct: 478 PVSTSHMLSEKGGGTVHKRKRPDSELSLYLDSDSDQSENESMSATDSVKRVLGHCHEFSN 537
Query: 175 KVGSISEQANRDVVDGKLAIVDTRKEQD---KRKSHTLPSQGCSSS 217
K S+ + A+ D D ++ +D K+ H P QG S +
Sbjct: 538 KSSSVEKIASPDGTDDEVLFLDIHPSSGPYAKKARHASPIQGKSKA 583
>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 33.9 bits (74), Expect = 0.52
Identities = 33/165 (20%), Positives = 60/165 (36%)
Query: 546 TSLASGVSNSTKLTKQDPGIESTITTKVSNVERKNIVSSVKNVGINTVTEAVPEENINQL 605
TS S +T T P +ES++TT + V+ +V T + + +
Sbjct: 379 TSSMESSSMATTSTTSTPSLESSMTTNSTTSTLVEAVALSSSVLPTTTSVLTSSMESSSM 438
Query: 606 XXXXXXXXXXXXVPETGDSSDRTLTEDNVTSTKDVPLSENVAKFKWQHSSNNCLACVRTR 665
T +++ TL E TS+ +P + +V + SS + T
Sbjct: 439 ATTSTTSTPSLESSMTSNNTTLTLAEAVATSSPVLPTTTSVLTSSMEPSSMATTSTTSTP 498
Query: 666 PPSSYELREAFFAALDKTSTSGGEPQSPIASITASVERSSNSPET 710
SS + +TS + + +T+S+E S + T
Sbjct: 499 LESSMTTNSTTSTLAEAVATSSPVLPTTTSVLTSSMESSMATTST 543
Score = 30.3 bits (65), Expect = 6.4
Identities = 36/162 (22%), Positives = 57/162 (35%), Gaps = 8/162 (4%)
Query: 546 TSLASGVSNSTKLTKQDPGIESTITTKVSNVERKNIVSSVKNVGINTVTEAVPEENINQL 605
TS S +T T P +ES++TT + V+ +V T + + +
Sbjct: 683 TSSMESSSMATTSTTSAPSLESSMTTNSTTSTLAQAVAISSSVSPTTTSVLTSSMEFSSM 742
Query: 606 XXXXXXXXXXXXVPETGDSSDRTLTEDNVTSTKDVPLSENVAKFKWQHSSNNCLACVRTR 665
T +S+ TL E S+ +P + +V + SS + T
Sbjct: 743 ATTSTTTTPSLESSMTTNSTTSTLAEAVAISSPVLPTTTSVLTSSMESSS------IATT 796
Query: 666 PPSSYELREAFFAALDKTST--SGGEPQSPIASITASVERSS 705
+S E+ TST SP+ T SV SS
Sbjct: 797 STTSTPSLESSMTTNSTTSTLAEAVAISSPVLPTTTSVLTSS 838
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 31.9 bits (69), Expect = 2.1
Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 618 VPETGDSSDRTLTEDNVT-STKDVPLSENVAKFKWQHSSNNCLACVRTRPPSSYELREAF 676
+PET + D T+ + T ++ VP++E A + +S +A T P S ++
Sbjct: 1359 IPETTVAPDTTVAPKSTTLASTVVPITETAAGPETTLASETTMAPKTTLAPESTVAKKTT 1418
Query: 677 FAA----LDKTSTSGGE---PQSPIASITASVERSSNSPETEVLRQ 715
++ +T+ + G P+S +AS T V +++ PET + ++
Sbjct: 1419 MSSETTMAQETTVAPGTTMAPESTLASKTTMVSQTTAGPETTLAQE 1464
>SB_3218| Best HMM Match : Ribosomal_S25 (HMM E-Value=0.65)
Length = 290
Score = 31.9 bits (69), Expect = 2.1
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 150 ETSEHSDHTDQS-ATESLQSDYKHATKVGSISEQANRDVVDGKLAIVDTRKEQDKRKSHT 208
++S+ ++ D + +TE L+ K KV +E N + + + I D K++ +KSH+
Sbjct: 67 KSSQQTEELDVAMSTECLKKAKKSKLKVTEGNENDNENASENGVDIADYNKDEKGKKSHS 126
Query: 209 LPSQGCSSSHDRPMLSESRTVDI 231
+ + E+R D+
Sbjct: 127 SSKGENKEKNSKKAKRETREADV 149
>SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 31.1 bits (67), Expect = 3.7
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 124 EIYSMYENGSYYSVTSPDYRANAYDTETSEHSDHTDQSATESLQSDYKHATKVGSISEQA 183
E+Y ENG+ S P + + + S T Q TES + Y+ AT V ++ +
Sbjct: 151 ELYGCQENGTQSSFDYPYPMSGSCENIPSTEPPTTLQPNTESPTTPYRPATPVTNLKIKL 210
Query: 184 NRDVV 188
+ DV+
Sbjct: 211 SSDVI 215
>SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)
Length = 465
Score = 31.1 bits (67), Expect = 3.7
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 177 GSISEQANRDVVDGKLAIVDTRKEQDKRKSHT 208
G +S Q R+V+DG+ AI+ EQ +RK H+
Sbjct: 188 GMLSHQLKRNVIDGEKAIIQNPNEQ-QRKDHS 218
>SB_36309| Best HMM Match : FeS (HMM E-Value=8)
Length = 122
Score = 31.1 bits (67), Expect = 3.7
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 132 GSYYSVTSPDYRANAYDTETSEHSDHTDQSATESLQSDYKH 172
G YY TSPDY +E SE+ S ++L S YKH
Sbjct: 82 GGYYPETSPDYYQQGMPSEYSEYQQGY-PSDYQNLASYYKH 121
>SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05)
Length = 1312
Score = 30.7 bits (66), Expect = 4.9
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 131 NGSYYSVTSPDYRANAYDTETSEHSDHTDQSATESLQSDYKHATKV---GSISEQANRDV 187
N SY TSP R + D S HS +S +L S H T+ SI ++ RD+
Sbjct: 1065 NSSYSLQTSPRGRPHISDHHESLHSGSAYRSYHNNLDSLNNHRTEYQGQSSIGAESYRDI 1124
Query: 188 VDGKLAIVD 196
+D +D
Sbjct: 1125 LDRVRQTID 1133
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 30.7 bits (66), Expect = 4.9
Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 6/113 (5%)
Query: 541 SGALKTSLASGVSNSTKLTKQDPGIESTITTKVSNVERKNIVSSVKNVGINTVTEA---- 596
S A KT+ A + ++++ + TT S + N ++ + T T A
Sbjct: 291 SAAPKTTAAPETTTASEINVASKTTAAPKTTTASEINVANKTTAAHETTVATKTTAAPET 350
Query: 597 --VPEENINQLXXXXXXXXXXXXVPETGDSSDRTLTEDNVTSTKDVPLSENVA 647
VPE PET D+S T+ T ++D +S ++
Sbjct: 351 TSVPETTATNTAPDKTAVPKTTTAPETTDASKTTVETQQTTYSRDPEISVTIS 403
>SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
Length = 1353
Score = 30.3 bits (65), Expect = 6.4
Identities = 21/75 (28%), Positives = 29/75 (38%)
Query: 143 RANAYDTETSEHSDHTDQSATESLQSDYKHATKVGSISEQANRDVVDGKLAIVDTRKEQD 202
R + T+TS+ D Q+A S +K + ++D GK A R Q
Sbjct: 142 RQTSRKTKTSKPQDQDKQAARPRQASRKTKTSKPQDQDKSQDQDKPQGKQAARQARPRQA 201
Query: 203 KRKSHTLPSQGCSSS 217
RKS P Q S
Sbjct: 202 SRKSKARPRQASRKS 216
>SB_54392| Best HMM Match : G6PD_N (HMM E-Value=1.3)
Length = 277
Score = 29.9 bits (64), Expect = 8.5
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 191 KLAIVDTRKEQDKRKSHTLPSQGCSSSHDRPMLSESRTVDILRDCSNYDRPGVIRVPAAE 250
+LA V+TR ++ KRKS T+P + +S +S T++ D G+I A+
Sbjct: 122 ELATVETRAQKRKRKSETVPERAATSKTATMTVS---TIESHNQNVEEDESGIIIETRAQ 178
Query: 251 NR 252
R
Sbjct: 179 KR 180
>SB_24377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 211
Score = 29.9 bits (64), Expect = 8.5
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 185 RDVVDGKLAIVDTRKEQDKRKSHTLPSQGCSSSHDRPMLSESRTVDILRDCSNYDRPGVI 244
R+ + +LA V TR ++ KRKS T+P + +S +S T++ D G+I
Sbjct: 27 RNTEEEELATVKTRAQKRKRKSETVPERAATSKTTTMTVS---TIESHDQNVEEDESGII 83
Query: 245 RVPAAENR 252
A+ R
Sbjct: 84 IETRAQKR 91
>SB_16002| Best HMM Match : Clathrin (HMM E-Value=1.1)
Length = 977
Score = 29.9 bits (64), Expect = 8.5
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 165 SLQSDYKHATKVGSISEQANRDVVDGKLAIVDTRKEQDKRKSHTLPSQGCSS 216
++Q + + KV S+S + LA V+TR ++ KRKS T+P + +S
Sbjct: 166 TVQEEGNNDDKVESVSNTEEEE-----LATVETRAQKRKRKSETVPERAATS 212
>SB_8560| Best HMM Match : E-MAP-115 (HMM E-Value=6.4)
Length = 173
Score = 29.9 bits (64), Expect = 8.5
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 191 KLAIVDTRKEQDKRKSHTLPSQGCSSSHDRPMLSESRTVDILRDCSNYDRPGVIRVPAAE 250
+LA V+TR ++ KRKS T+P + +S +S T++ D G+I A+
Sbjct: 36 ELATVETRAQKRKRKSETVPERAATSKTATMTVS---TIESHNQNVEEDESGIIIETRAQ 92
Query: 251 NR 252
R
Sbjct: 93 KR 94
>SB_34035| Best HMM Match : Ku_C (HMM E-Value=8.8)
Length = 116
Score = 29.9 bits (64), Expect = 8.5
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 165 SLQSDYKHATKVGSISEQANRDVVDGKLAIVDTRKEQDKRKSHTLPSQGCSS 216
++Q + + KV S+S + LA V+TR ++ KRKS T+P + +S
Sbjct: 38 TVQEEGNNDDKVESVSNTEEEE-----LATVETRAQKRKRKSETVPERAATS 84
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.129 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,823,348
Number of Sequences: 59808
Number of extensions: 955416
Number of successful extensions: 3294
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3263
Number of HSP's gapped (non-prelim): 44
length of query: 807
length of database: 16,821,457
effective HSP length: 88
effective length of query: 719
effective length of database: 11,558,353
effective search space: 8310455807
effective search space used: 8310455807
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 64 (29.9 bits)
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