GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000359-TA|BGIBMGA000359-PA|undefined
         (807 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    27   0.80 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               26   1.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   9.9  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 26.6 bits (56), Expect = 0.80
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 469 IKEDDTDKNDS--NRGRISSFLADT-SVASVEKYRTTPDLSKNSKGMYFFLIFRYIF 522
           ++  +T   DS  + GR S+ L  + S A +EK      L +   G+ +FL+  ++F
Sbjct: 2   LRRQETSNEDSYLSAGRPSNLLRTSFSSAKLEKLYRASSLQQRRGGLEYFLLSAFLF 58


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 318 QRPKIPELQRRTSTSSFSGPEVTNSPPTQMDMTGYATLKSLNRRPHLSESAASCSSEIDD 377
           QRP    +  + S  +F+ PE+ ++    +DM     +++  R  HLS+   +  +E  +
Sbjct: 298 QRPDENVVTDKKSKVNFALPELQHNLNILVDMCEQDIIQNDRRTRHLSDRVVALEAEKKN 357

Query: 378 LS 379
           LS
Sbjct: 358 LS 359


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 646 VAKFKWQHSSNNCLACVRTRPPSSYELRE 674
           + KFK +  S++C AC      S Y   E
Sbjct: 267 IGKFKHEAGSHSCEACPAHSKSSDYGFTE 295


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.129    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,210
Number of Sequences: 429
Number of extensions: 8670
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 3
length of query: 807
length of database: 140,377
effective HSP length: 63
effective length of query: 744
effective length of database: 113,350
effective search space: 84332400
effective search space used: 84332400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)