GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000359-TA|BGIBMGA000359-PA|undefined
         (807 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15180.1 68417.m02328 SET domain-containing protein contains ...    32   1.3  
At2g02770.1 68415.m00220 COP1-interacting protein-related simila...    31   2.3  
At5g39020.1 68418.m04722 protein kinase family protein contains ...    31   4.0  
At1g08840.1 68414.m00984 DNA replication helicase, putative simi...    30   5.3  
At5g13150.1 68418.m01506 exocyst subunit EXO70 family protein le...    30   7.0  
At5g02820.1 68418.m00224 DNA topoisomerase VIA (SPO11) identical...    30   7.0  
At3g20370.1 68416.m02581 meprin and TRAF homology domain-contain...    30   7.0  
At1g55325.1 68414.m06320 expressed protein                             30   7.0  
At5g63710.1 68418.m07997 leucine-rich repeat transmembrane prote...    29   9.3  
At5g16920.1 68418.m01983 expressed protein                             29   9.3  
At4g38710.1 68417.m05483 glycine-rich protein cylicin II - bovin...    29   9.3  
At1g55690.3 68414.m06377 SEC14 cytosolic factor family protein /...    29   9.3  
At1g55690.2 68414.m06376 SEC14 cytosolic factor family protein /...    29   9.3  
At1g55690.1 68414.m06375 SEC14 cytosolic factor family protein /...    29   9.3  

>At4g15180.1 68417.m02328 SET domain-containing protein contains
           Pfam profile PF00856: SET domain
          Length = 2326

 Score = 32.3 bits (70), Expect = 1.3
 Identities = 33/106 (31%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 122 PDEIYSMYENGSYYSVTSPDYRANAYDTETSEHSDHTDQSATESLQSDYKHATKVGSISE 181
           PD I   +    Y    S   R  + D   S HSDH  Q + E L  D  + +K  S+ E
Sbjct: 344 PDSIERKHSYADYGDYGSSKCRKLSDDCSRSLHSDHYSQHSAERLYRD-SYPSKNSSL-E 401

Query: 182 QANRDVVDGKLAIVDTRKEQDKRKSHTLPSQGCSSSHDRPMLSESR 227
           +  R   D   A    +   DK   H+ PS+   S HDR    E+R
Sbjct: 402 KYPRKHQD---ASFPAKAFSDKH-GHS-PSRSDWSPHDRSRYHENR 442


>At2g02770.1 68415.m00220 COP1-interacting protein-related similar
           to COP1-interacting protein 4 (CIP4) [Arabidopsis
           thaliana] GI:13160646, COP1-interacting protein 4.1
           (CIP4.1) [Arabidopsis thaliana] GI:13160650
          Length = 548

 Score = 31.5 bits (68), Expect = 2.3
 Identities = 17/51 (33%), Positives = 24/51 (47%)

Query: 180 SEQANRDVVDGKLAIVDTRKEQDKRKSHTLPSQGCSSSHDRPMLSESRTVD 230
           +E  N+D VDGK A   T   +  +K  T   +   +  D  + S SR VD
Sbjct: 234 NEGLNKDGVDGKYADEATTSVKAAKKGRTKKDKAAPTKEDTEVASSSRNVD 284


>At5g39020.1 68418.m04722 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 813

 Score = 30.7 bits (66), Expect = 4.0
 Identities = 20/95 (21%), Positives = 48/95 (50%), Gaps = 1/95 (1%)

Query: 496 VEKYRTTPDLSKNSKGMYFFLIFRYIFFKLYSILKTIAF-LGADGISGALKTSLASGVSN 554
           + + +   +  +NS  M+  L+ +YI+ +L  I K+ +  +G  G     + +L++G + 
Sbjct: 462 IRQMKRKKNKKENSVIMFKLLLKQYIYAELKKITKSFSHTVGKGGFGTVYRGNLSNGRTV 521

Query: 555 STKLTKQDPGIESTITTKVSNVERKNIVSSVKNVG 589
           + K+ K   G       +V+++ + + V+ V  +G
Sbjct: 522 AVKVLKDLKGNGDDFINEVTSMSQTSHVNIVSLLG 556


>At1g08840.1 68414.m00984 DNA replication helicase, putative similar
           to helicase [Xenopus laevis] gi|18845092|gb|AAL79550
          Length = 1296

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 38/182 (20%), Positives = 76/182 (41%), Gaps = 12/182 (6%)

Query: 553 SNSTKLTKQDPGIEST--ITTKVSNVERKNIVSSVKNVGINTVT-EAVPEENINQLXXXX 609
           S++ K  KQ     S+   T  +  +  ++I +S      +T T + V ++N+N L    
Sbjct: 9   SSALKSNKQSSANHSSQPSTFGIQQLFLRHIQNSQSTSNSHTSTADPVDQQNVNGLASDT 68

Query: 610 XXXXXXXXVPETGDSSDRTLTEDNVTSTKDVPLSENVAKFK----WQHSSNNCLACVRTR 665
                   +  + +  D +   D   +     +S+N+ +F      + S ++C   +  +
Sbjct: 69  AVLTPQNPLGTSNEKPDESKDMDQQLTEASPKISKNLKRFSPGMLIKQSQDDCGGEITWK 128

Query: 666 -PPSSYELREA---FFAALDKTSTSGGEPQSPIASITASVERSSNSPETEVLRQVHLMAN 721
             P +  LR A       +D T  S G+ Q P + IT+ VE+  +SP  +  ++     N
Sbjct: 129 ISPVNERLRAAAKNIPKMMDLTENSLGK-QCPTSGITSKVEQWLSSPSKKASKRPAFATN 187

Query: 722 PI 723
            +
Sbjct: 188 RV 189


>At5g13150.1 68418.m01506 exocyst subunit EXO70 family protein
           leucine zipper-containing protein - Lycopersicon
           esculentum, EMBL:Z12127 contains Pfam domain PF03081:
           Exo70 exocyst complex subunit;
          Length = 653

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 150 ETSEHSDHTDQSATESLQSDYKHATKVGSISEQANRDVVDGKLAIVD 196
           E+SE+ DH  +       SD  H++   S SE +   +V+   A+VD
Sbjct: 12  ESSENHDHKSEDHENKQHSDELHSSTPESQSESSEHSLVEVMEAVVD 58


>At5g02820.1 68418.m00224 DNA topoisomerase VIA (SPO11) identical to
           topoisomerase 6 subunit A (spo11) [Arabidopsis thaliana]
           GI:12331186
          Length = 427

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 69  VVRLVKYCPVYSIRATAFYVLGLIGCTYDGANLLT-ELGWLCVRHTRHDQFPVIPDE 124
           V+ LV   P Y ++  + Y  G    +YD ANL T ++ WL +R +  D++  IP++
Sbjct: 303 VLALVDSDP-YGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYK-IPEQ 357


>At3g20370.1 68416.m02581 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 379

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 643 SENVAKFKWQHSSNNCLACVRTRPPSSYELR-EAFFAALDKTST 685
           ++ ++   ++ S++N +  +R RPPSSY L+ E+F   L  T T
Sbjct: 61  NKEISSRDYKVSASNAVKGLRDRPPSSYSLKMESFNTLLKSTYT 104


>At1g55325.1 68414.m06320 expressed protein
          Length = 1921

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 111 RHTRHDQFPVIPDEIYSMYENGSYYSVTSPDYRANAYDTETSEHSDHTDQSATESLQSDY 170
           R  RHD+ P +  +  S  E G   S+ S    ANA      + +D      +  L S  
Sbjct: 707 RKGRHDKLPTVISDNSSTKE-GVSQSIHSKHSAANAVKVVQGKKTDGISAVVSTLLSSKT 765

Query: 171 KHATKVGSISEQA 183
             AT VGS+  QA
Sbjct: 766 LLATDVGSVMFQA 778


>At5g63710.1 68418.m07997 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 614

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 179 ISEQANRDVVDGKLAIVDTRKEQDKRKSHTLPSQGCSSSHDRPMLSE 225
           + EQ  RD+VD  L   D+++ +   +   L +QG  S  DRP +SE
Sbjct: 513 LREQRLRDIVDSNLTTYDSKEVETIVQVALLCTQG--SPEDRPAMSE 557


>At5g16920.1 68418.m01983 expressed protein
          Length = 256

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 188 VDGKLAIVDTRKEQDKRKSHTLPSQGCSSSHD 219
           +DG L    T  +   R +HTLP   C SSH+
Sbjct: 160 IDGILQSPSTVDDDSPRNNHTLPFISCPSSHN 191


>At4g38710.1 68417.m05483 glycine-rich protein cylicin II - bovine,
           PIR2:I46014
          Length = 452

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 12/52 (23%), Positives = 29/52 (55%)

Query: 150 ETSEHSDHTDQSATESLQSDYKHATKVGSISEQANRDVVDGKLAIVDTRKEQ 201
           +++EHS+   Q    +++   K  T+     E+A ++  +G+ A+ + +KE+
Sbjct: 382 KSTEHSEEDAQEEEPAVEGAKKEETEDKPAVEEAKKEETEGEQAVEEAKKEE 433


>At1g55690.3 68414.m06377 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein similar to
           similar to phosphatidylinositol transfer-like protein IV
           (GI:14486707) [Lotus japonicus] and Phosphatidylinositol
           Transfer Protein GB:2780955 GI:2780955 [Saccharomyces
           cerevisiae]
          Length = 621

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 9/118 (7%)

Query: 636 STKDVPLSENVAKFKWQHSSNNCLACVRTRPPSSYELREAFFAALDK-TSTSGGEPQSP- 693
           S  DVP S            N+     R    + Y   +  FA  DK T+  G E QS  
Sbjct: 384 SCSDVPSSPTGRLCSASSHVNSAYEEARASDVNGYYSCDDKFAIPDKATNRKGQERQSQY 443

Query: 694 ----IASITASVERSSNSPETEVLRQVH---LMANPIHLKQTRSMLLSLKQKHSEVFR 744
               + + T  ++  ++SP   ++R +H   +M + I  +     LLSL  K + VFR
Sbjct: 444 QMRELNATTIGLKCETSSPGAPIIRWLHDLRVMIDKIKCENLAKRLLSLMLKLAAVFR 501


>At1g55690.2 68414.m06376 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein similar to
           similar to phosphatidylinositol transfer-like protein IV
           (GI:14486707) [Lotus japonicus] and Phosphatidylinositol
           Transfer Protein GB:2780955 GI:2780955 [Saccharomyces
           cerevisiae]
          Length = 625

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 9/118 (7%)

Query: 636 STKDVPLSENVAKFKWQHSSNNCLACVRTRPPSSYELREAFFAALDK-TSTSGGEPQSP- 693
           S  DVP S            N+     R    + Y   +  FA  DK T+  G E QS  
Sbjct: 384 SCSDVPSSPTGRLCSASSHVNSAYEEARASDVNGYYSCDDKFAIPDKATNRKGQERQSQY 443

Query: 694 ----IASITASVERSSNSPETEVLRQVH---LMANPIHLKQTRSMLLSLKQKHSEVFR 744
               + + T  ++  ++SP   ++R +H   +M + I  +     LLSL  K + VFR
Sbjct: 444 QMRELNATTIGLKCETSSPGAPIIRWLHDLRVMIDKIKCENLAKRLLSLMLKLAAVFR 501


>At1g55690.1 68414.m06375 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein similar to
           similar to phosphatidylinositol transfer-like protein IV
           (GI:14486707) [Lotus japonicus] and Phosphatidylinositol
           Transfer Protein GB:2780955 GI:2780955 [Saccharomyces
           cerevisiae]
          Length = 625

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 9/118 (7%)

Query: 636 STKDVPLSENVAKFKWQHSSNNCLACVRTRPPSSYELREAFFAALDK-TSTSGGEPQSP- 693
           S  DVP S            N+     R    + Y   +  FA  DK T+  G E QS  
Sbjct: 384 SCSDVPSSPTGRLCSASSHVNSAYEEARASDVNGYYSCDDKFAIPDKATNRKGQERQSQY 443

Query: 694 ----IASITASVERSSNSPETEVLRQVH---LMANPIHLKQTRSMLLSLKQKHSEVFR 744
               + + T  ++  ++SP   ++R +H   +M + I  +     LLSL  K + VFR
Sbjct: 444 QMRELNATTIGLKCETSSPGAPIIRWLHDLRVMIDKIKCENLAKRLLSLMLKLAAVFR 501


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.129    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,172,901
Number of Sequences: 28952
Number of extensions: 669517
Number of successful extensions: 2091
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2085
Number of HSP's gapped (non-prelim): 16
length of query: 807
length of database: 12,070,560
effective HSP length: 87
effective length of query: 720
effective length of database: 9,551,736
effective search space: 6877249920
effective search space used: 6877249920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)