Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000358-TA|BGIBMGA000358-PA|undefined
         (971 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14991| Best HMM Match : PI3_PI4_kinase (HMM E-Value=1.9)            56   1e-07
SB_55178| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.030
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   1.5  
SB_23093| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   1.5  
SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.9  
SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      32   2.6  
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        31   3.4  
SB_57807| Best HMM Match : SNF (HMM E-Value=5.9e-10)                   31   4.5  
SB_46673| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   4.5  
SB_39770| Best HMM Match : TolA (HMM E-Value=0.33)                     30   7.8  
SB_35503| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   7.8  
SB_14502| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   7.8  

>SB_14991| Best HMM Match : PI3_PI4_kinase (HMM E-Value=1.9)
          Length = 235

 Score = 56.0 bits (129), Expect = 1e-07
 Identities = 29/94 (30%), Positives = 54/94 (57%), Gaps = 7/94 (7%)

Query: 76  SRKLAYLNALVTLLCK-EERSNLGFTPDELMACLRISLVDESMVIRAAALRVIRHLLKTD 134
           ++++ Y+N    L+   +E++N G+  ++++ CL++ L   +  +RAA +R +RHL    
Sbjct: 138 TKRMGYINNFTKLIQNFDEKTNFGYCMEDIIKCLQVPLTMPAKEVRAAGVRALRHLFS-- 195

Query: 135 YDVTIFNNM---KLPYLVVRSMEVIIRNEEERAQ 165
            D T F  M   ++   ++RSM+  I NE ER Q
Sbjct: 196 -DKTTFEKMLKVRMDIFIIRSMDNTIANEVERIQ 228


>SB_55178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 38.3 bits (85), Expect = 0.030
 Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 9/88 (10%)

Query: 611 IRSTLVMQNKDGNTWNWEIIRTILKENDTTPFFNLNDSGHKAWATRIVNYLKPSSNKYSH 670
           IR T V+  KD   W+WE+I   L++        L ++ ++ +   ++ + KPSS ++  
Sbjct: 68  IRDTQVVTEKDFRKWDWELIGATLQK--------LEETNNQRFIRNLLYFYKPSSQQFCT 119

Query: 671 MDLSSTCYGHSATRAGCQLIRHLLRHND 698
           + ++      + +RAG  LI  LL  +D
Sbjct: 120 VSITDN-MAKTYSRAGLLLIDFLLDTDD 146


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 16/68 (23%), Positives = 32/68 (47%)

Query: 507  CSGAFKEKNEDAAKSRKEKDNANIRPRQEIGIHKNDSIELLNESDNENETKQRHSVGSRN 566
            CS    + N     +    +N++I  R     + N+SI   N +++ N     +S+ +RN
Sbjct: 1710 CSSNNSDNNSIINNNSINNNNSSINNRSNNHNNNNNSINNCNNNNSINNRNNNNSINNRN 1769

Query: 567  DVTNRNIS 574
            +  N +I+
Sbjct: 1770 NTNNNSIN 1777


>SB_23093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 495 SSSLFLDHIIQYCSGAFKEKNEDAAKSRKEKDNANIRPRQEIGIHKNDSIELLNESDNEN 554
           S S F +++    +  F   NE    + K+    N + R    I   DS   LN+S+N N
Sbjct: 12  SGSEFTENVPTQQTPNFNSMNEAKDNTTKKDYYVNRQTRVMEQITSTDSSRSLNKSEN-N 70

Query: 555 ETKQRHSVGSRNDVT 569
             KQ+H +G   + T
Sbjct: 71  LQKQQHEIGMETEAT 85


>SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1643

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 609 SLIRSTLVMQNKDGNTWNWEIIRTILKENDTTPFFNLN-DSGHKAWATRIVNYLKPSSNK 667
           S +++  + Q+    + N + ++      DTT  FNL+ +S H+ +AT   +  KPS +K
Sbjct: 50  SPVKTRRMRQSLSDTSPNCDSLQPNQVSPDTTRTFNLSMESSHQMFATGPTSRKKPSRSK 109

Query: 668 YSHMDL--SSTCYGHSATRAGCQ 688
           +S +++   +  YG S     CQ
Sbjct: 110 HSPVEMIDLNNQYGISPPVVDCQ 132


>SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1080

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 512 KEKNEDAAKSRKEKDNANIRPRQEIGIHKNDSIELL--NESDNENETKQRHSVGSRND 567
           KEK +D AK + E+     + ++EIG  K+D  E    NES+ +++  +    G ++D
Sbjct: 549 KEKGDDKAKDKTEESKDGEK-KEEIGDKKSDKEESAEKNESEKDDDDGKEDDKGDKDD 605


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 787 SSLDYTLDSYPRDILSKTLTCSIQASRLYATQFLNVLMRASRKSKELVRRKTKLKKNTEE 846
           + L   LD   R++  ++   S++ S+ Y  Q  NV  + +   +++   +  LKK+ E 
Sbjct: 521 NELQAELDKAHRELQKESKGGSLKISK-YEAQINNVTKQKNALKQQVDNLREDLKKSKEA 579

Query: 847 SNSIQKDEIEN 857
            N +Q++ +EN
Sbjct: 580 QNLLQREVLEN 590


>SB_57807| Best HMM Match : SNF (HMM E-Value=5.9e-10)
          Length = 260

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 12/58 (20%)

Query: 505 QYCSGAFKEKNEDAAKSRKEKDNANIRPRQEIGIHKNDSIELLNESDNENETKQRHSV 562
           Q+CS  + E ++D  K  +  DN+            N++ +  N  DNEN  K +H+V
Sbjct: 194 QFCSNGYDEDDDDNGKDNENSDNSK----------DNENSD--NSKDNENSDKSKHNV 239


>SB_46673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 506 YCSGAFKEK-NEDAAKSRKEKDNANIRPRQEIGIHKNDSIELLNESDNENETKQRHSVGS 564
           Y + ++ E  N + + ++ + +N++         ++ND+    NE+DN N   +  +  S
Sbjct: 20  YNNNSYNENDNNNNSDNKNDNNNSDNENDNNNSYNENDNSNSDNENDNNNSNNENDNNNS 79

Query: 565 RNDVTNRN 572
            N+  N N
Sbjct: 80  NNENDNNN 87



 Score = 30.7 bits (66), Expect = 5.9
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 513 EKNEDAAKSRKEKDNANIRPRQEIGIHKNDSIELLNESDNENETKQRHSVGSRNDVTNRN 572
           +   D   S  E DN+N         ++ND+    NE+DN N   +  +  S N+  N N
Sbjct: 44  DNENDNNNSYNENDNSN-------SDNENDNNNSNNENDNNNSNNENDNNNSNNESDNNN 96

Query: 573 ISAL 576
           I ++
Sbjct: 97  IISI 100


>SB_39770| Best HMM Match : TolA (HMM E-Value=0.33)
          Length = 732

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 512 KEKNEDAAKSRKEKDNANIRPRQEIGIHKNDSIELLNESDNENETKQRHSVGSRNDVTNR 571
           +E+ E+ A  RKEK+ A    R+E+   + +    L +   ++  K R S+   ++   R
Sbjct: 303 REREEEEAALRKEKEEALDAVREELEEEQEEKESRLRDEKEQSLRKLRESLAREHEKEKR 362

Query: 572 NI 573
            I
Sbjct: 363 KI 364


>SB_35503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 221 GGASAVSRQLAECATPRQAEALCGALLHVLDRPGPRRAAR 260
           GG +A+ R + +C  PR  EAL   LL +L+    R   R
Sbjct: 2   GGINAIIRNVLDCQVPRLNEALMVTLLFLLNNSDSRPYVR 41


>SB_14502| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 221 GGASAVSRQLAECATPRQAEALCGALLHVLDRPGPRRAAR 260
           GG +A+ R + +C  PR  EAL   LL +L+    R   R
Sbjct: 2   GGINAIIRNVLDCQVPRLNEALMVTLLFLLNNSDSRPYVR 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,743,108
Number of Sequences: 59808
Number of extensions: 1194461
Number of successful extensions: 3447
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3419
Number of HSP's gapped (non-prelim): 26
length of query: 971
length of database: 16,821,457
effective HSP length: 89
effective length of query: 882
effective length of database: 11,498,545
effective search space: 10141716690
effective search space used: 10141716690
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 65 (30.3 bits)