Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000358-TA|BGIBMGA000358-PA|undefined
(971 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0303 - 3337454-3337544,3338358-3338521,3338624-3338805,333... 35 0.36
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732... 33 1.5
08_01_1022 + 10323158-10323393,10323486-10323531,10325887-103259... 31 4.5
11_03_0073 - 9621199-9621312,9621401-9621476,9621553-9621619,962... 31 5.9
06_03_0555 + 22080522-22080845,22081190-22081290,22081916-22082027 31 5.9
03_01_0594 - 4385291-4385503,4385647-4385829,4385944-4386117,438... 30 7.8
01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123... 30 7.8
>10_01_0303 -
3337454-3337544,3338358-3338521,3338624-3338805,
3339088-3339322
Length = 223
Score = 34.7 bits (76), Expect = 0.36
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 204 ATLAEISVVNPELWVWCGGASAVSRQLAECATPRQAEALCGA----LLHVLDRPGPRRAA 259
A +A +VV E G A AV+R++ E P LC A + HVL P P A
Sbjct: 6 AVVARGTVVLAEFSAVSGNAGAVARRILEKLPPDAESRLCFAQDRYIFHVLRSPPPAAAD 65
Query: 260 RLTTACLTH 268
LT C+ +
Sbjct: 66 GLTFLCMAN 74
>07_03_1578 +
27872636-27872840,27872928-27873175,27873215-27873295,
27873665-27873822,27874391-27874450,27874655-27874873,
27875100-27875201,27875352-27875500,27875582-27875734,
27875839-27876194
Length = 576
Score = 32.7 bits (71), Expect = 1.5
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 509 GAFKEKNEDAAKSRKEKDNANIRPRQEIGIHKNDSIEL-LNESDNENETKQRHSVGSRND 567
G KEKN+ +AK K+K + +E+ + K + + +NEN+ K++H + D
Sbjct: 457 GGEKEKNDTSAKKNKKKKSKAEADGEEMDLDKPAKVAAEETDPENENKKKKKHKLEEPQD 516
>08_01_1022 +
10323158-10323393,10323486-10323531,10325887-10325941,
10326027-10326107,10326189-10326400
Length = 209
Score = 31.1 bits (67), Expect = 4.5
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 465 MSQASNGKPQALAAVAALRKLHAMLEARPASSSLFLDHIIQYCSG 509
M A+ P A+A + LR+ A L A++SLF + CSG
Sbjct: 38 MVAAAGEDPDAIAELPPLRRARAFLAMAKAAASLFAGRQLSRCSG 82
>11_03_0073 -
9621199-9621312,9621401-9621476,9621553-9621619,
9621655-9621751,9621898-9621996,9622348-9622358,
9622716-9622784,9622871-9623195,9623287-9623457,
9623538-9623713,9624173-9624414,9624481-9624542,
9625305-9625340,9626103-9626262,9626372-9626606,
9626694-9626949,9627062-9627176,9628388-9628450,
9628592-9629325
Length = 1035
Score = 30.7 bits (66), Expect = 5.9
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 504 IQYCSGAFKEKNEDAAKSRKEKDNANIRPRQEIGIHKNDSIELLNESDNENETKQRHSVG 563
I+ C+ F E + K + +E+ K D + +LNE +NE K SV
Sbjct: 281 IEACTDGFSESKK-VGSGAYGKVYKGVYNEEELAFKKIDGLAVLNEDQFKNELKHLMSVQ 339
Query: 564 SRNDV 568
RN V
Sbjct: 340 HRNIV 344
>06_03_0555 + 22080522-22080845,22081190-22081290,22081916-22082027
Length = 178
Score = 30.7 bits (66), Expect = 5.9
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 43 VRKSTQNDTSPSYKTVPTEYRSGFRGMHRSSTDSRKLAYLNALVTL 88
+++ T + P T + +R G RG R ST +RK+A ALV++
Sbjct: 68 IQRPTSSHVEPEEVTTASRWRDG-RGSVRRSTATRKMATFAALVSI 112
>03_01_0594 -
4385291-4385503,4385647-4385829,4385944-4386117,
4386213-4386373,4386470-4386551,4386626-4386658,
4386755-4387161,4387237-4387381,4387483-4387587,
4387704-4387826,4387908-4388027,4388118-4388237,
4388569-4388775,4388857-4389036,4389151-4389285,
4389382-4389519,4389630-4389728,4389832-4389951,
4390029-4390091
Length = 935
Score = 30.3 bits (65), Expect = 7.8
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 358 ISVALDAVDPSDFQDTWRLNEGFVAAEGIAILPHLA 393
++++ D V PS D+W+LNE F A G+ I +LA
Sbjct: 696 MTISKDRVKPSPSPDSWKLNEIFAA--GVVIGTYLA 729
>01_06_0847 +
32411521-32411619,32411737-32411851,32412292-32412375,
32412430-32413478,32414690-32416371,32416477-32416586,
32417634-32418430,32418839-32418951,32419147-32419194,
32419425-32419652,32419732-32419829,32419967-32420019
Length = 1491
Score = 30.3 bits (65), Expect = 7.8
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 794 DSYPRDILSKTLT-CSIQASRLYATQFL----NVLMRASRKSKELVRRKTKLKKNTEESN 848
+S RD+L K + Q S L +Q + N L+R + +E+ R K L + ++SN
Sbjct: 118 ESDARDMLEKEIIELKAQNSALQQSQSVCKDGNELIRITELEEEIRRLKQVLVEEKKKSN 177
Query: 849 SIQKDEIENSGVDMETWFLQMLVGQMKDEFK 879
S +K+ E G +E L + +E+K
Sbjct: 178 SEKKNAEEEKGKVLELQRLLNMETHKSEEYK 208
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.134 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,725,322
Number of Sequences: 37544
Number of extensions: 1032726
Number of successful extensions: 2519
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2517
Number of HSP's gapped (non-prelim): 8
length of query: 971
length of database: 14,793,348
effective HSP length: 89
effective length of query: 882
effective length of database: 11,451,932
effective search space: 10100604024
effective search space used: 10100604024
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 65 (30.3 bits)
- SilkBase 1999-2023 -