GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000358-TA|BGIBMGA000358-PA|undefined
         (971 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeot...    27   3.1  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    25   7.2  

>AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeotic
           protein protein.
          Length = 308

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 11/61 (18%)

Query: 510 AFKEKNEDAAKSRKEKDNANIRPRQEIGIHKNDSIELLNESDNENETKQRHSVGSRNDVT 569
           A KE NE A + R+E+D             KN+S++   +  ++ + +Q H+V      +
Sbjct: 199 AVKEINEQARREREEQDKM-----------KNESLKSAQQHHSQKQAQQEHTVVGSQQTS 247

Query: 570 N 570
           N
Sbjct: 248 N 248


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 904 PMRETLCQNCRLNKNADPATYD 925
           P  E LC+NCRL K    A  D
Sbjct: 296 PAIEVLCENCRLAKERLEAAID 317


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 902,627
Number of Sequences: 2123
Number of extensions: 35568
Number of successful extensions: 52
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49
Number of HSP's gapped (non-prelim): 3
length of query: 971
length of database: 516,269
effective HSP length: 71
effective length of query: 900
effective length of database: 365,536
effective search space: 328982400
effective search space used: 328982400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)