GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000358-TA|BGIBMGA000358-PA|undefined
         (971 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   6.9  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 6.9
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 12/65 (18%)

Query: 510 AFKEKNEDAAKSRKEKDNANIRPRQEI------------GIHKNDSIELLNESDNENETK 557
           A K K E   K   E DN NI+ ++E              IH+  S  L  + D     K
Sbjct: 78  AGKPKEETDDKDDDESDNENIKSQKEFPNSSSSDDERPNSIHQRASFSLNTDGDIAGLRK 137

Query: 558 QRHSV 562
           ++H V
Sbjct: 138 KKHKV 142


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,930
Number of Sequences: 429
Number of extensions: 9960
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 1
length of query: 971
length of database: 140,377
effective HSP length: 64
effective length of query: 907
effective length of database: 112,921
effective search space: 102419347
effective search space used: 102419347
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)