GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000358-TA|BGIBMGA000358-PA|undefined
         (971 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07020.1 68415.m00803 protein kinase family protein contains ...    36   0.099
At3g28770.1 68416.m03591 expressed protein                             31   2.8  
At4g32910.1 68417.m04683 expressed protein                             31   3.7  
At4g02720.1 68417.m00368 expressed protein temporary automated f...    30   6.5  
At3g42640.1 68416.m04431 ATPase, plasma membrane-type, putative ...    30   6.5  
At4g27430.1 68417.m03942 COP1-interacting protein 7 (CIP7) ident...    30   8.6  

>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 36.3 bits (80), Expect = 0.099
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 8/102 (7%)

Query: 399 ITENHLALLLQCFLEVGLLDGLAEVIVTS------DTFISVRATXXXXXXXXXXXXXXPP 452
           + EN + +L+    ++ LL  L  V VT+        F +V A               PP
Sbjct: 103 VQENAIDILVLGASKITLLKRLKAVDVTNAVIKGAPNFCTVYAISKGKISSVRSATSSPP 162

Query: 453 PICNITPALPVLMSQASNG--KPQALAAVAALRKLHAMLEAR 492
           P+C I P LP   S A+N    P+A   + +++ +   +E +
Sbjct: 163 PLCTIRPQLPARSSNANNNNFSPRAQRRLQSVQSIQDEIEIK 204


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 5/47 (10%)

Query: 512 KEKNEDAAKSRKEKDNANIRPRQEIGIHKNDSI--ELLNESDNENET 556
           K+K +D  K +KE  N+N++ ++E    K + +  EL  + DN+ ET
Sbjct: 938 KQKGKDKKKKKKESKNSNMKKKEE---DKKEYVNNELKKQEDNKKET 981


>At4g32910.1 68417.m04683 expressed protein
          Length = 716

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 17/52 (32%), Positives = 24/52 (46%)

Query: 331 YLPRLEKAILDLLYELVGLPQPEWTDEISVALDAVDPSDFQDTWRLNEGFVA 382
           Y+    + I  LL   + LP P   D  SV  +A +P+  +  W L E F A
Sbjct: 129 YVMEYSRDIKSLLSNTISLPAPLIEDPRSVIKNAEEPTSLKAAWELMELFYA 180


>At4g02720.1 68417.m00368 expressed protein temporary automated
           functional assignment
          Length = 422

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 513 EKNEDAAKSRKEKDNANIRPRQEIGIHKNDSIELLNESDNENETKQRHSVGSRNDVTNRN 572
           E   D  +SRK K  ++   R+    + +DS    +ESD+E E ++R    S     +R+
Sbjct: 105 ESESDGLRSRKRKSKSSRSKRRRKRSYDSDSESEGSESDSEEEDRRRRRKSSSKRKKSRS 164


>At3g42640.1 68416.m04431 ATPase, plasma membrane-type, putative /
           proton pump, putative strong similarity to P-type
           H+-ATPase from [Lycopersicon esculentum] GI:1621440,
           [Solanum tuberosum] GI:435001, SP|Q03194 {Nicotiana
           plumbaginifolia}; contains InterPro accession IPR001757:
           ATPase, E1-E2 type
          Length = 948

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 358 ISVALDAVDPSDFQDTWRLNEGFVAAEGIAILPHLAAT 395
           ++++ D V PS   D+W+LNE F  A G+ +  ++A T
Sbjct: 691 MTISKDRVKPSPVPDSWKLNEIF--ATGVVLGTYMALT 726


>At4g27430.1 68417.m03942 COP1-interacting protein 7 (CIP7)
           identical to COP1-Interacting Protein 7 (CIP7)
           GI:3327868 from [Arabidopsis thaliana]
          Length = 1058

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 513 EKNEDAAKSRKEKDNANIRPRQEIGIHKNDSIELLNESDNENE-TKQRHSVGSRN 566
           E NE ++K +K+K     + +Q+     +D+     ES++ NE  KQ   V  RN
Sbjct: 334 ESNEKSSKKKKKKKKNKKKSKQDESAEPSDNSSTETESEDGNEGKKQSRKVVIRN 388


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,962,570
Number of Sequences: 28952
Number of extensions: 840881
Number of successful extensions: 2279
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2265
Number of HSP's gapped (non-prelim): 16
length of query: 971
length of database: 12,070,560
effective HSP length: 88
effective length of query: 883
effective length of database: 9,522,784
effective search space: 8408618272
effective search space used: 8408618272
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 64 (29.9 bits)