Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000357-TA|BGIBMGA000357-PA|undefined
         (159 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    31   0.11 
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    29   0.25 
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    28   0.57 
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   1.0  
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p...    27   1.3  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   1.3  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    27   1.7  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   3.1  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    26   3.1  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   4.0  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   5.3  
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...    25   7.1  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    24   9.3  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    24   9.3  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    24   9.3  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    24   9.3  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    24   9.3  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.3  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    24   9.3  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 30.7 bits (66), Expect = 0.11
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 11   DKENVRPNPYYTEPFDPDTSPEELSALIVDYANMIRNDVILLDNSVETRTRKRGNIQVEN 70
            DK+ V  NP   E F PD++P +  A   D  N++ N  +  +  VE R+      Q E 
Sbjct: 1333 DKQKVALNPSAPE-FVPDSTPSDAVASETDNKNLVENKAV--EKRVEARSSANERKQEER 1389

Query: 71   K 71
            +
Sbjct: 1390 R 1390


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 29.5 bits (63), Expect = 0.25
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 2   KRARNDVLGDKENVRPNPYYTEPF 25
           KR   D++G K N+ P  Y T PF
Sbjct: 448 KRLNEDIIGPKLNINPPDYTTHPF 471


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 28.3 bits (60), Expect = 0.57
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 105 KESLYSITILKRRETKSQES-LEIPNELKYRWVAESHPVSVACL 147
           +ES+Y  TIL R ETKS  S  ++P  L+  + ++S  + VA L
Sbjct: 289 EESIYFSTILLREETKSLISPKKLPGYLENLFKSDSDNIVVALL 332


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 12/78 (15%)

Query: 57  ETRTRKRGNIQVENKEIEDLGENSVPRFIETRNCNKTQQPTCRPPYICKESLYSITILKR 116
           E    K   +     E+ DL EN    F E++   + ++PT          +Y++   K+
Sbjct: 42  EDLDNKEEALDFSEDELSDLDENQFENFDESKIGREAEEPT----------IYNLPTFKK 91

Query: 117 RETKS--QESLEIPNELK 132
           ++  +  +E+LE+P +++
Sbjct: 92  KQEPNTIEENLEVPRKVR 109


>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 202

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 1  MKRARNDVLGDKENVRPNPYYTEPFDPDTSPEELSALIVDYANMIRNDVILL 52
          ++ A  + LG  +NV      ++PF P   P E +AL++ +++ I N   L+
Sbjct: 40 IRAADRESLGILQNVTHEA--SQPFQPQDHPSEAAALLMFHSSSIYNKRCLM 89


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 57   ETRTRKRGNIQVENKEIEDLGENSVPRFIETRNCN 91
            E   RKR    +++K I D  +  V +F++T   N
Sbjct: 1424 EINERKRNESMLQSKRILDSAQQDVAKFVDTSQSN 1458


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 11/105 (10%)

Query: 8   VLGDKENVRPNPYYTEPFDPDTSPEE---LSALIVDYANMI--------RNDVILLDNSV 56
           ++G  + +RP    TE  DP+ + +E   +S  + +  N++        + DVI +D+S 
Sbjct: 312 LVGTTDTIRPGLLNTEVIDPNANDDERMVISETLEEEENLLALAAKRSKKKDVITVDHSK 371

Query: 57  ETRTRKRGNIQVENKEIEDLGENSVPRFIETRNCNKTQQPTCRPP 101
                 + +  VE +E+++L    V     + +  K +   C  P
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKP 416


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 5   RNDVLGDKENVRPNPY-YTEPFDPDTSPEELSALI---VDYANMIRNDVILLDNSVETRT 60
           R+  +G      P  Y Y EP  P +S  + +++    VD++   R+ +   D+  +  +
Sbjct: 849 RDSTVGGGILKNPKAYPYREPTPPGSSDSDTASVSKKRVDFSLGTRHLMPAFDDVADIGS 908

Query: 61  RKRGNIQVENKEIEDLGENSVPRFIETR 88
           ++ G   + +  IE+ G  ++ R  E R
Sbjct: 909 KRLGRDSLPDAVIENAGTEAMRREAEER 936


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 86  ETRNCNKTQQPTCRPPYICKESLYSITILKRRETKSQESLEIP 128
           E +  NK+   + +   + + SL + T++ R+     E LEIP
Sbjct: 213 EDKEINKSMSYSMKNEGVKESSLQNATLINRKSIIDDEMLEIP 255


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 31  PEELSALIVDYANMI--RNDVILLDNSVETRTRKRGNIQVENKEIEDLGENSVPRFIETR 88
           P+   + +VD +     R   +L D S  T + +     VEN   E +   S P   E  
Sbjct: 838 PQHQDSSVVDVSTSASQRGSPVLSDLSKLTGSARNTAEPVENTSAEPIENTSAPTPFEIA 897

Query: 89  NCNKTQQPTCRP 100
           N  +  +P   P
Sbjct: 898 NKQQATEPISAP 909


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 14/133 (10%)

Query: 2   KRARNDVLGDKENVRPNPYYTEPFDPDTSPEELSALIVDYANMIRNDVILLDNSVETRTR 61
           K+A ND LG+KEN+          D      E S  + +  + +  D     N +ET   
Sbjct: 787 KKALNDNLGNKENIIS--------DLKNKLSEESTRLQELQSQLNQD----KNQIETLNE 834

Query: 62  KRGNIQVENKEIEDLGENSVPRF-IETRNCNKTQQPTCRPPYICKESLYSITIL-KRRET 119
           +      E   +E + +N      +  + C+  Q+       + KE    I+ L K  E 
Sbjct: 835 RISAAADELSSMESINKNQANELKLAKQKCSNLQEKINFGNKLAKEHTEKISSLEKDLEA 894

Query: 120 KSQESLEIPNELK 132
            ++ +  +  ELK
Sbjct: 895 ATKTASTLSKELK 907


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 4/44 (9%)

Query: 34  LSALIVDYANMIRNDVILLDNSVETRTRKRGNIQ----VENKEI 73
           L  + V  ++ +++++IL  NS+E  ++   NI+    V NK+I
Sbjct: 127 LPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDI 170


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 27  PDTSPEELSALIVDYANMIRNDVIL 51
           P  SPEE S +   Y+N+   ++IL
Sbjct: 265 PAPSPEEWSTITAKYSNLHNGNLIL 289


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 100 PPYICKESLYSITILKRRETKSQESLEIP 128
           PP   K S  ++T++  R+ K+ + +E+P
Sbjct: 89  PPKHLKRSFQNVTVVSPRKKKTIDVVELP 117


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 40 DYANMIRNDVILLDNSVETRTRKRGNIQVENKEIEDLGENSVPRFIETRNCNKTQQP 96
          DYA  ++     LDN VE   + +  +++  +  E+ GE        T+ C K ++P
Sbjct: 13 DYATGVKKLFDCLDNGVEENEQVKNLLKLYKEANEEFGEKLQE---ITKECLKGKKP 66


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 17  PNPYYTEPFDP-DTSPEELSALIVDYANMI----RNDVILLDNSVETRTRKRGNIQVENK 71
           PN     P D  +TS    SAL  D    I    R ++  L+NS      K G + +ENK
Sbjct: 497 PNINCWRPADGNETSAAYYSALTSDSTPSILALTRQNLPQLENSTIENALKGGYVMLENK 556

Query: 72  EIE 74
           E +
Sbjct: 557 EAD 559


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 11/59 (18%), Positives = 26/59 (44%)

Query: 53  DNSVETRTRKRGNIQVENKEIEDLGENSVPRFIETRNCNKTQQPTCRPPYICKESLYSI 111
           D  V   +       V   +++D+ +N +P+  E+   + +  P   PP    ++L ++
Sbjct: 227 DTIVTAESASSKGADVARSKVQDIIDNEIPKPSESPRRSVSSTPPVHPPPPVPQNLSAV 285


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 11  DKENVRPNPYYTEPFDPDTSPEELSAL 37
           +KE  +PN +   P   DT   ELS L
Sbjct: 203 NKETYQPNTFRRSPLKNDTGSVELSNL 229


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 37  LIVDYANMIRNDVILLDNSVETRTRKRGNIQVEN 70
           L VDYANM  N +   + +++   +K  N+  EN
Sbjct: 416 LQVDYANMWLNIINFNEKNLKFYAKKVANVSDEN 449


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.132    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 816,292
Number of Sequences: 5004
Number of extensions: 33132
Number of successful extensions: 80
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 67
Number of HSP's gapped (non-prelim): 20
length of query: 159
length of database: 2,362,478
effective HSP length: 68
effective length of query: 91
effective length of database: 2,022,206
effective search space: 184020746
effective search space used: 184020746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 50 (24.2 bits)