GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000356-TA|BGIBMGA000356-PA|undefined
         (189 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    25   0.51 
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    24   0.89 
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    24   0.89 
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   1.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   2.7  
AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450 ...    21   6.3  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 24.6 bits (51), Expect = 0.51
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 77  SHKIRQDICPYCGKI 91
           +H+  QD  PYCGKI
Sbjct: 379 THRHPQDEIPYCGKI 393


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 23.8 bits (49), Expect = 0.89
 Identities = 10/29 (34%), Positives = 22/29 (75%), Gaps = 1/29 (3%)

Query: 50  ICKKPIKPKVLKNVVLLQSDPDVVKKRSH 78
           + KKP+  K+LKN+ ++Q+  + ++++SH
Sbjct: 87  LTKKPLWFKLLKNLKMVQNHNN-IREKSH 114


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 23.8 bits (49), Expect = 0.89
 Identities = 10/29 (34%), Positives = 22/29 (75%), Gaps = 1/29 (3%)

Query: 50  ICKKPIKPKVLKNVVLLQSDPDVVKKRSH 78
           + KKP+  K+LKN+ ++Q+  + ++++SH
Sbjct: 87  LTKKPLWFKLLKNLKMVQNHNN-IREKSH 114


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 102 CT-QPYSYKHDFNRHCFKKHGVFLKRRP 128
           CT +P   +   ++HC +KHG F    P
Sbjct: 92  CTSRPKLQEPQPSQHCPRKHGYFAHEEP 119


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 12/54 (22%), Positives = 22/54 (40%)

Query: 49  KICKKPIKPKVLKNVVLLQSDPDVVKKRSHKIRQDICPYCGKITKSLKAHALIC 102
           KI ++ + P  L        D    K  + + ++++C  CG        +AL C
Sbjct: 152 KIGREDLSPSSLNGYSADSCDSKKKKGPTPRQQEELCLVCGDRASGYHYNALTC 205


>AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 125 KRRPVYVMNEEVLAQERIIMKDLLL 149
           K++PVY   +E+   ER+I + L L
Sbjct: 34  KKKPVYNDLQELKYMERVIKEVLRL 58


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.137    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,347
Number of Sequences: 317
Number of extensions: 1824
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 189
length of database: 114,650
effective HSP length: 53
effective length of query: 136
effective length of database: 97,849
effective search space: 13307464
effective search space used: 13307464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)