GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000356-TA|BGIBMGA000356-PA|undefined
         (189 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch...    29   0.43 
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    25   7.0  
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.0  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   7.0  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   7.0  
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    25   9.3  

>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 29.1 bits (62), Expect = 0.43
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 133 NEEVLAQERIIMKDLLLRIQGIIKDDKPLNPFEGP-QAHLAFEQAVKALES 182
           + EV+AQ + ++ DL    +  IK+D+PL P EG  Q  + + + +K L++
Sbjct: 52  DSEVVAQGKPLLNDLEA-FKSDIKNDRPLVPLEGEGQDIVEYNEELKQLDN 101


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/44 (20%), Positives = 22/44 (50%)

Query: 12  EDFHSDTDIVNESEKPLKLEKHKKGILKHEKGIEIEYKICKKPI 55
           E++H +  ++ E E+P K+ K +   +  ++  E       +P+
Sbjct: 505 ENYHKEGRVIKEGEQPRKMVKARAVTISRKREHEFRVAETNEPV 548


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 1/107 (0%)

Query: 22  NESEKPLKLEKHKKGILKHEKGIEIEYKICKKPIKPKVLKNVVLLQSDPDVVKKRSHKIR 81
           +ES  P+ L       L+  K          KP+  K L+ ++ +     + + R  + R
Sbjct: 138 SESSSPIPLSLLSTSSLQQRKITPSNLSNTSKPMDSKQLERLIPVPHGHHLTRLRKKRRR 197

Query: 82  QDICPYCGKI-TKSLKAHALICTQPYSYKHDFNRHCFKKHGVFLKRR 127
            D     G   TKS    A+   +  SY     R   K      KRR
Sbjct: 198 DDDIDLSGLYETKSSSPPAIHSDEDPSYSDSIARSPVKSAFNLRKRR 244


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 4   QRNEDSGAEDFHSDTDIVNESEKPLKLEKHKKGILKHE 41
           QRNE     + ++D    N+++  LKL   K  I K+E
Sbjct: 820 QRNECDNYSNHYNDNSNDNDNDVFLKLHWSKSAIKKYE 857


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 4   QRNEDSGAEDFHSDTDIVNESEKPLKLEKHKKGILKHE 41
           QRNE     + ++D    N+++  LKL   K  I K+E
Sbjct: 820 QRNECDNYSNHYNDNSNDNDNDVFLKLHWSKSAIKKYE 857


>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 19  DIVNESEKPLKLEKHKKGILKHEKGIEI 46
           +I NE    LKL  H+KGIL    G+ +
Sbjct: 178 EIANEVFDGLKLMIHQKGILNLWSGVSV 205


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.137    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 915,615
Number of Sequences: 5004
Number of extensions: 38671
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 114
Number of HSP's gapped (non-prelim): 6
length of query: 189
length of database: 2,362,478
effective HSP length: 69
effective length of query: 120
effective length of database: 2,017,202
effective search space: 242064240
effective search space used: 242064240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)