Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000356-TA|BGIBMGA000356-PA|undefined
(189 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850... 31 0.77
01_07_0126 - 41222916-41222942,41223120-41223190,41223478-412235... 29 2.3
10_08_0426 - 17817975-17818582,17819068-17819209,17819648-178197... 28 5.4
05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264... 28 5.4
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323... 28 5.4
08_02_0666 - 19823490-19823822,19823912-19824185,19824311-19826292 27 7.2
06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687... 27 7.2
09_04_0425 - 17448906-17449195,17449489-17449600 27 9.5
08_02_0377 + 16481232-16481361,16482501-16482547,16482634-164827... 27 9.5
03_03_0021 + 13808274-13808384,13809036-13809200,13809249-138092... 27 9.5
01_05_0571 + 23353319-23354293,23354431-23354574,23354684-23355052 27 9.5
01_05_0024 - 17262504-17263308,17264251-17264399,17264879-172649... 27 9.5
>10_05_0043 +
8503979-8504407,8506484-8506624,8506865-8506975,
8507746-8508330
Length = 421
Score = 30.7 bits (66), Expect = 0.77
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 23 ESEKPLKLEKHKKGILKHEKGIE-IEYKICKKPIKPKVLKNVVLLQSD--PDVV 73
+ + P L HK G KH+K +E ++ I KP+KP N V L ++ PD V
Sbjct: 286 QCDTPEVLRIHKTG-KKHKKNLERLQDSITPKPVKPPSTPNTVALAANMAPDPV 338
>01_07_0126 -
41222916-41222942,41223120-41223190,41223478-41223560,
41223587-41223653,41223740-41223848,41224431-41224511,
41224671-41224940,41225035-41226510,41226832-41226908,
41227812-41227912,41229397-41229660,41230964-41231136
Length = 932
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 3 DQRNEDSGAEDFHSDTDIVNESEKPLKLEKHKKGILKHEKGIEIEYKICK 52
++R EDS ++ T + ++K K L+H G+ EYK K
Sbjct: 395 NERPEDSVVKNMTKGTKVDKTCAVHSPIQKRKVNFLRHRSGVATEYKQIK 444
>10_08_0426 -
17817975-17818582,17819068-17819209,17819648-17819745,
17820070-17821897,17822331-17822738,17822891-17822943,
17823461-17823877,17824401-17824605
Length = 1252
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 3 DQRNEDSGAEDFHSDTDIVNESEKPLKLEKHKKGIL-KHEKGIEIEYKICKKPIKPKVLK 61
D EDS E+ ++ + +N+ + P+KLEK +EK +E ++ K K
Sbjct: 556 DDYTEDSVHENRATEAEYINDRQAPIKLEKGPANYCDNNEKHLESSDTEVEEEHKTKASD 615
Query: 62 NVVLLQSDPDV 72
+ LQ D V
Sbjct: 616 VSLDLQEDISV 626
>05_01_0334 -
2642998-2643063,2643125-2643169,2643552-2643617,
2643625-2643730,2643770-2644349,2645780-2645871,
2645969-2646035,2646126-2646231,2646628-2646708,
2646789-2647058,2647158-2648788,2648834-2649385,
2650602-2651324,2651451-2651526
Length = 1486
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/63 (25%), Positives = 29/63 (46%)
Query: 2 MDQRNEDSGAEDFHSDTDIVNESEKPLKLEKHKKGILKHEKGIEIEYKICKKPIKPKVLK 61
+D R +D GA+ S + ++P K+E + G K K ++ K P+ +L
Sbjct: 442 VDSREDDGGADRGKSKSHFPRAKKRPTKIEPGEIGDCKKCKNTKLSGKFEALPLSDLMLS 501
Query: 62 NVV 64
+ V
Sbjct: 502 SDV 504
>02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,
3238937-3239151,3239569-3240031,3240562-3240715,
3241724-3241833,3242540-3242797,3242843-3242854,
3243492-3243545,3244202-3244312,3244390-3244545,
3244798-3245201,3245405-3245501,3246041-3246050,
3246097-3246164,3246652-3246762,3246874-3247074,
3247384-3247485,3247980-3248087,3248209-3248411,
3248563-3248680,3248774-3248854,3248958-3249500,
3249602-3249730
Length = 1428
Score = 27.9 bits (59), Expect = 5.4
Identities = 23/107 (21%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 47 EYKICKKPIKPKVLKNVVLLQSDPDVVKKRSHKIRQDICPYCGKITKSLKAHALICTQPY 106
+Y IK +K+++L+++ ++ K+ ++ C C K LK H + +
Sbjct: 1155 KYPAALDAIKDLKMKDMLLVENYY-AYQRLLQKMSENKCHGCIK----LKEHIALMKEQK 1209
Query: 107 SYKHDFNRHCFKKHGVFLKRRPVYVMNEEVLAQERIIMKDLLLRIQG 153
YK N ++ L++ P + +VL + I DL+++++G
Sbjct: 1210 VYKDQLNDLKYEMSDEALQQMPEFQGRIDVLKEIHYIDSDLVVQLKG 1256
>08_02_0666 - 19823490-19823822,19823912-19824185,19824311-19826292
Length = 862
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 8 DSGAEDFHSDTDIVNESEKPLKLEKHKKGILKH 40
D A+ H TD+ ESEK L+ EKH + + H
Sbjct: 498 DDVADALHHATDLT-ESEKRLRHEKHYRYVRSH 529
>06_03_1496 -
30567968-30568210,30568345-30568513,30568635-30568736,
30569087-30571855,30572402-30572430,30572546-30572659,
30572735-30572846,30574730-30574845,30574928-30575068,
30575121-30575243,30575346-30575478,30575842-30575972,
30576065-30576300,30577073-30577376
Length = 1573
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 16 SDTDIVNESEKPLKLEKHKKGILKHEKGIEIEYKICK 52
SD+DI+++ +KP + KKG ++KG +CK
Sbjct: 600 SDSDILHDDDKPPRKSPKKKG---NKKGKHYRRAVCK 633
>09_04_0425 - 17448906-17449195,17449489-17449600
Length = 133
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 60 LKNVVLLQSDPDVVKKRSHKIRQDICPYCGKITKSLK 96
L+ +++L K + ++ ++C +CGK +S+K
Sbjct: 96 LRGIIVLSPMMPTPKSTAQQLTSNLCHFCGKAFRSVK 132
>08_02_0377 +
16481232-16481361,16482501-16482547,16482634-16482711,
16482826-16482896,16483005-16483086
Length = 135
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 25 EKPLKLEKHKKGILKHEKGIEIEYKICKKPIKPKVLKNVVLLQSDPDV 72
+K KLEK K +L+ EK +IE ++ V++ +V L S+ DV
Sbjct: 17 KKKAKLEKAKSKLLELEKKADIEENTRVTAVE-SVMQALVFLDSEHDV 63
>03_03_0021 +
13808274-13808384,13809036-13809200,13809249-13809278,
13809279-13809397,13809696-13809770,13812071-13812146,
13813224-13813289,13813364-13813462,13814072-13814174,
13814338-13814411
Length = 305
Score = 27.1 bits (57), Expect = 9.5
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 41 EKGIEIEYKICKKPIKPKVLKNVVLLQSDPDVVKKRSHKIRQDICPYCGKITKSLKAHAL 100
E+ ++I +ICK+ + ++N+ L P + ++R+D+ +C I K
Sbjct: 64 EQVLQITLEICKEDVLSLFVQNLPSLGWGPVEIVSSELQVRKDLV-HCWCILLRQKFDES 122
Query: 101 ICTQPYSYKH----DFNRHCFKKHGVFL 124
C Y H DF C+K V L
Sbjct: 123 YCCVKYIENHLELLDFLVGCYKNLDVAL 150
>01_05_0571 + 23353319-23354293,23354431-23354574,23354684-23355052
Length = 495
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 57 PKVLKNVVLLQSDPDVVKKRSHKIRQDICPYCGKITKSLKAH 98
P VL +V LL PD +R H R D+ ++T+ L +H
Sbjct: 81 PLVLDDVDLLDI-PDEDLRRGHSHRVDLAAAASRVTRVLTSH 121
>01_05_0024 -
17262504-17263308,17264251-17264399,17264879-17264978,
17265829-17265953,17267565-17267743,17269648-17270698
Length = 802
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 24 SEKPLKLEKHKKGILK--HEKGIEIEYKICKKPIKP--KVLKNVVLLQSDPDVVKKRSHK 79
S P +E K +L H++ + ++ K IK +V+ N+VLLQ + +++R +
Sbjct: 625 SSPPRLVEPPIKDLLYAWHDQLERLPIELAKTAIKSFAEVISNIVLLQEEEVNLRRRCEE 684
Query: 80 IRQDI 84
R+D+
Sbjct: 685 TRRDL 689
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.137 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,352,009
Number of Sequences: 37544
Number of extensions: 211471
Number of successful extensions: 550
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 544
Number of HSP's gapped (non-prelim): 14
length of query: 189
length of database: 14,793,348
effective HSP length: 78
effective length of query: 111
effective length of database: 11,864,916
effective search space: 1317005676
effective search space used: 1317005676
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
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