Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000356-TA|BGIBMGA000356-PA|undefined
(189 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18330.1 68418.m02157 U-box domain-containing protein weak si... 30 1.1
At5g25410.1 68418.m03014 expressed protein contains Pfam profil... 29 1.5
At1g79150.1 68414.m09229 expressed protein ; expression supporte... 29 2.0
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam... 28 3.4
At5g61150.2 68418.m07672 leo1-like family protein weak similarit... 28 4.5
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic... 28 4.5
At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein ... 28 4.5
At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative... 28 4.5
At5g61150.1 68418.m07671 leo1-like family protein weak similarit... 27 6.0
At5g37350.2 68418.m04487 RIO1 family protein similar to extragen... 27 6.0
At5g37350.1 68418.m04486 RIO1 family protein similar to extragen... 27 6.0
At5g22360.1 68418.m02609 synaptobrevin family protein similar to... 27 6.0
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 27 6.0
At3g48360.1 68416.m05278 speckle-type POZ protein-related conta... 27 7.9
At2g42760.1 68415.m05295 expressed protein 27 7.9
At2g42110.1 68415.m05207 expressed protein 27 7.9
At1g70130.1 68414.m08070 lectin protein kinase, putative similar... 27 7.9
>At5g18330.1 68418.m02157 U-box domain-containing protein weak
similarity to immediate-early fungal elicitor protein
CMPG1 [Petroselinum crispum] GI:14582198; contains Pfam
profile PF04564: U-box domain
Length = 445
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 32 KHKKGILKHEKGIEIEYKICKKPIKPKVLKNVVLLQSDPDVVKKRSHK 79
++ ++ E + I Y ICK K L+NVVL + DVV + +K
Sbjct: 373 RNSNSLVNDENAVVIVYNICKSY---KALQNVVLREEKRDVVLEEENK 417
>At5g25410.1 68418.m03014 expressed protein contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 369
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 65 LLQSDPDVVKKRSHKIRQDICPYCGKITKSLKA-HALICTQPYSYKHDFNRH 115
L++SDP++V R+ KIR+++ C I K H L+ K +RH
Sbjct: 22 LIRSDPNMVPLRTFKIRENVTYDCINIYKQPGLDHPLLKNHKIQMKPSVSRH 73
>At1g79150.1 68414.m09229 expressed protein ; expression supported
by MPSS
Length = 495
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 8 DSGAEDFHSDTDIVNESEKPLKLEKHKKGILKHEKGIEIE 47
D +D D ++N+S++ K +K K+ KHEK + E
Sbjct: 121 DEAEKDVLEDEHVLNKSQRREKAKKSKREAKKHEKDLPDE 160
>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 883
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 3 DQRNEDSGAEDFHSDTDIVNESEKPLKLEKHKKGILKHEKG 43
D+ +D G EDF +D D+ + E+ ++ K LK KG
Sbjct: 222 DEDEDDDGDEDFTADEDVSLDEEEEEEIIACNKNALKVCKG 262
>At5g61150.2 68418.m07672 leo1-like family protein weak similarity
to SP|P38439 LEO1 protein {Saccharomyces cerevisiae};
contains Pfam profile PF04004: Leo1-like protein;
supporting cDNA gi|21929714|gb|AF490422.1|
Length = 623
Score = 27.9 bits (59), Expect = 4.5
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 3 DQRNEDSGAEDFHSDTDIVNESEKPLKLEKHKKGILKHEKGIEIEYKICKKPIKPKVLKN 62
++ E+ G + +SD D E E+ + EK +G + KGIE + + P +
Sbjct: 557 EEDEEERGKSNRYSDED--EEEEEGGRAEKDHRGSGRKRKGIESDEEESPPRKAPTHRRK 614
Query: 63 VVLLQSDPD 71
V+ SD D
Sbjct: 615 AVIDDSDED 623
>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
Nicotiana tabacum, EMBL:AB009883
Length = 1008
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 15 HSDTDIVNESEKPLKLEKHKKGILKHEKGIEIEY 48
H + ++ NE+EKP K +K K+ +K E E+
Sbjct: 828 HDEEEVPNETEKPEKKKKKKREGKSKKKETETEF 861
>At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 917
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 3 DQRNEDSGAEDFHSDTDIVNESEKPLKLEKHKK 35
D ++D G ED D D V+ S K ++LE+ +
Sbjct: 644 DDDDDDDGDEDDDDDDDDVDPSSKDIRLEEENE 676
>At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
Ferredoxin--NADP reductase, chloroplast precursor (EC
1.18.1.2) (FNR) from {Pisum sativum} SP|P10933,
{Mesembryanthemum crystallinum} SP|P41343, {Spinacia
oleracea} SP|P00455, [Capsicum annuum] GI:6899972
Length = 369
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 6 NEDSGAEDFHSDTDIVNESEKPLKLEKHKKGILKHEKGIEIEYKICKKPIKPKVLKNVVL 65
N +G F I E++ P +K +K K+E+G+ + K+P K L N +
Sbjct: 44 NVVTGKRVFSIKAQITTETDTPTPAKKVEKVSKKNEEGVIVNRYRPKEPYTGKCLLNTKI 103
Query: 66 LQSD 69
D
Sbjct: 104 TADD 107
>At5g61150.1 68418.m07671 leo1-like family protein weak similarity
to SP|P38439 LEO1 protein {Saccharomyces cerevisiae};
contains Pfam profile PF04004: Leo1-like protein;
supporting cDNA gi|21929714|gb|AF490422.1|
Length = 625
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 3 DQRNEDSGAEDFHSDTDIVNESEKPLKLEKHKKGILKHEKGIEIEYKICKKPIKPKVLKN 62
++ E+ G + +SD D E + EK +G + KGIE + + P +
Sbjct: 557 EEDEEERGKSNRYSDEDEEEEEVAGGRAEKDHRGSGRKRKGIESDEEESPPRKAPTHRRK 616
Query: 63 VVLLQSDPD 71
V+ SD D
Sbjct: 617 AVIDDSDED 625
>At5g37350.2 68418.m04487 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 385
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 7 EDSGAEDFHSDTDIVNESEKPLKLEKHKKGILKHEKGIEIEYKICKKPIKPKVLK 61
E+ E+ S + ESEK L E K +H+K ++ E + +K PK +K
Sbjct: 318 EEEEEEEEGSGEESEEESEKELGPEDKKAARKEHKKKVKEEKRESRKTKTPKSVK 372
>At5g37350.1 68418.m04486 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 531
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 7 EDSGAEDFHSDTDIVNESEKPLKLEKHKKGILKHEKGIEIEYKICKKPIKPKVLK 61
E+ E+ S + ESEK L E K +H+K ++ E + +K PK +K
Sbjct: 464 EEEEEEEEGSGEESEEESEKELGPEDKKAARKEHKKKVKEEKRESRKTKTPKSVK 518
>At5g22360.1 68418.m02609 synaptobrevin family protein similar to
Synaptobrevin-like protein 1 (SP:P51809) [Homo sapiens]
Length = 221
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 105 PYSYKHDFNRHCFKKHGVFLKRRPVYVMNEE 135
P+SY + + K +G P Y MN+E
Sbjct: 77 PFSYLEEIHMRFMKNYGKVAHNAPAYAMNDE 107
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 27.5 bits (58), Expect = 6.0
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 25 EKPLKLEKHKKGILKHEKGIEIEYKICKKPIKPK-VLKNVVLLQSDPDVVKKRSHKIRQD 83
EKP++ +K +K I + E K +KP++ K V K V Q + + +KR K+ D
Sbjct: 162 EKPVERKKAEKPIELKQVEKPFERKQVEKPVERKQVEKPVERKQVEKPIERKRPTKLHVD 221
Query: 84 I 84
+
Sbjct: 222 L 222
>At3g48360.1 68416.m05278 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; similar to Speckle-type
POZ protein (SP:O43791) [Homo sapiens]
Length = 364
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 85 CPYCGKITKSLKAHALICTQPYSYKHDFNRHCFKKHG 121
C C ++ + + H+LIC QP S + R F+K G
Sbjct: 287 CLRCKRMLQLFRLHSLICDQPDSCRVPLCRQ-FRKRG 322
>At2g42760.1 68415.m05295 expressed protein
Length = 267
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 11 AEDFHSDTDIVNESEKPLKLEKHKKGILKHEKGIEIEYKI 50
+ED H D+D+V+ +L K G+ K E+ E E KI
Sbjct: 166 SEDDHKDSDLVSILPGLQRLVKKDDGVTKEEEEEEEEDKI 205
>At2g42110.1 68415.m05207 expressed protein
Length = 137
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 2 MDQRNEDSGAEDFHSDTDIVNESEKPLKLEKHKKGILKHEKGIEIE 47
+++++ D F +D D V+ES K K K EKG++IE
Sbjct: 18 VNKKSSDELLRKF-ADPDDVDESSKSTKRRKKSAKSSSREKGVDIE 62
>At1g70130.1 68414.m08070 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733
Length = 656
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 58 KVLKNVVLLQSDPDVVKKRSHKIRQDICPYCGKI 91
KV K ++ L S P VKK SH RQ + + +I
Sbjct: 347 KVFKGILPLSSIPIAVKKISHDSRQGMREFLAEI 380
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.137 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,627,793
Number of Sequences: 28952
Number of extensions: 194616
Number of successful extensions: 535
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 522
Number of HSP's gapped (non-prelim): 21
length of query: 189
length of database: 12,070,560
effective HSP length: 77
effective length of query: 112
effective length of database: 9,841,256
effective search space: 1102220672
effective search space used: 1102220672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
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