Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000355-TA|BGIBMGA000355-PA|IPR002853|Transcription
factor TFIIE, alpha subunit
(421 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4029| Best HMM Match : No HMM Matches (HMM E-Value=.) 248 9e-66
SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35) 33 0.33
SB_31268| Best HMM Match : zf-C2H2 (HMM E-Value=5.04467e-44) 33 0.44
SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0) 33 0.44
SB_58580| Best HMM Match : zf-AD (HMM E-Value=0.29) 32 0.76
SB_32644| Best HMM Match : zf-C2H2 (HMM E-Value=0) 32 1.0
SB_4879| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.0
SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.0
SB_56660| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 1.3
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 1.3
SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 1.3
SB_37978| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 1.8
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.1
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 30 4.1
SB_34398| Best HMM Match : eIF-3c_C (HMM E-Value=0.91) 29 5.4
SB_24580| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 5.4
SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 5.4
SB_59654| Best HMM Match : LIM (HMM E-Value=0.0026) 29 7.1
SB_21510| Best HMM Match : zf-C2H2 (HMM E-Value=6.3e-07) 29 7.1
SB_8254| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 7.1
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 29 9.4
SB_20827| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.4
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42) 29 9.4
SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.4
>SB_4029| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 248 bits (606), Expect = 9e-66
Identities = 148/423 (34%), Positives = 221/423 (52%), Gaps = 17/423 (4%)
Query: 3 EERYVTEVPSSLKQLARLVVRGFYTIEDALIVDMLV--RNPCMKEDDICELLKFERKMLR 60
E +TE+P LK+LA++VVRGFY E I+++L ++PC+KEDD+ +L++F+++ LR
Sbjct: 7 EPELLTEIPPVLKRLAKVVVRGFYDTEQVAIINVLTNAKHPCVKEDDLMDLVRFDKRQLR 66
Query: 61 ARISILKNDKFIQVRLKMETGLD-GKAQKVNYYFINYKTFVNVVKYKLDLMRKRLETEER 119
+ LKNDK I+ R+ E D G NYYFIN+K FVNVVKYKLD +RK++E++E+
Sbjct: 67 QALVRLKNDKLIKQRIHKEKAPDTGMTLTFNYYFINFKVFVNVVKYKLDHVRKKIESDEK 126
Query: 120 DATSRASFKCPACGKTFTDLEADQLYDMATQEFQCTFCSAVVDEDMSALPK-KDSRLLLA 178
A +R SF C C ++DLE D+L DM T + +V+ED S + + + R LA
Sbjct: 127 QAKNRPSFVCSECHNKYSDLEVDRLIDMTTGVVEV----GIVEEDTSEIQEGNNKRTSLA 182
Query: 179 KFNEQLETLYILLREVEGIKLAPEILEPEPVDINTIRGLTSKQSALRPGGEQWSGEATRN 238
KFNEQ+E ++ LLR+ E I LA ILEPEP D+ +I S G SG A+
Sbjct: 183 KFNEQIEPIFKLLRDSENINLADAILEPEP-DLTSINKHVSHSHI--SGHASRSGWASDR 239
Query: 239 QGMLVEETRVDVTIGDDKPARDAGALRKERPVWMVESTIASNEQSDSAHSTDXXXXXXXX 298
GM + + +++G + A A KE P+WM +ST+ S ++ + +T
Sbjct: 240 YGMEATDLGIKISMGAEDEAGAANKRVKEAPIWMKQSTVHSAPEAVAQAATPSAASTSEK 299
Query: 299 XXXXXXXXGKEKNDDIMSVLLAHEKQPSAGNPVSNAVKGLXXXXXXXXXXXXXXPYKLKD 358
D++++ LLAHE A G
Sbjct: 300 HALDHST-----EDEVLADLLAHESVAKKPKLDIKAALGEDENSSSSDSDSEKASNATAP 354
Query: 359 ELAAVAE-MEXXXXXXXXNAPSVMVNGKTVPLTSVDDDVIAQMTPTEKETYIQIYQEYYS 417
V + M+ + VNGK V L V DD++ M+P E+E Y + +++ YS
Sbjct: 355 THDKVTDFMDAADSDDEEEEHKIKVNGKVVALGDVTDDMMKLMSPEEEEAYHKAFEQAYS 414
Query: 418 HMY 420
HMY
Sbjct: 415 HMY 417
>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
Length = 224
Score = 33.5 bits (73), Expect = 0.33
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 8/138 (5%)
Query: 85 KAQKVNYYFINYKTFVNVVKYKLDLMRKRLETEERDATSRASFKCPACGKTFTDLEAD-- 142
+ Q+ Y N+K + + +D++ KR+ + T A + CG ++ +
Sbjct: 68 QVQRARYEAANWK-YKFGYEIPVDMLCKRIADISQVYTQNAEMRPLGCGMILIGIDEEKG 126
Query: 143 -QLYDMATQEFQCTF--CSAVVD--EDMSALPKKDSRLLLAKFNEQLETLYILLREVEGI 197
QLY + C F CS V E S L KK + FNE +ET L V
Sbjct: 127 PQLYKTDPAGYFCGFKACSVGVKQTEANSFLEKKVKKKHAWTFNETVETAISCLSSVLSA 186
Query: 198 KLAPEILEPEPVDINTIR 215
P LE V ++ R
Sbjct: 187 DFKPSELEVGVVSMDNPR 204
>SB_31268| Best HMM Match : zf-C2H2 (HMM E-Value=5.04467e-44)
Length = 454
Score = 33.1 bits (72), Expect = 0.44
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 114 LETEERDATSRASFKCPACGKTF---TDLEADQLYDMATQEFQCTFC 157
L+T +R T FKCP CG+ F + LE+ + + ++C C
Sbjct: 325 LKTHQRVHTGEKPFKCPICGRPFAQSSGLESHKRVHTGQKPYKCEVC 371
>SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 587
Score = 33.1 bits (72), Expect = 0.44
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 115 ETEERDATSRASFKCPACGKTFTDLE--ADQLYDMATQEFQCTFCSAVVDED 164
+ E +T +KCP C K F+D E D +E++C C V E+
Sbjct: 175 QLERHKSTHARVYKCPHCKKVFSDKEKRKDHYISAHKKEYRCGKCDLVFTEN 226
>SB_58580| Best HMM Match : zf-AD (HMM E-Value=0.29)
Length = 233
Score = 32.3 bits (70), Expect = 0.76
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 8/125 (6%)
Query: 93 FINYKTFVNVVKYKLDLMRKRLETEERDATSRASFK--CPACGKTFTDLEADQLYDMATQ 150
F + F V ++ + RK + T + +A K C CGK +A LY Q
Sbjct: 7 FGRLRIFEVVARFNIAHERKEMATAKAEAKHFEILKGLCRVCGKRLK--KAKSLY---AQ 61
Query: 151 EFQCTFCSAVVDEDMSALPKKDSRLLLA-KFNEQLETLYILLREVEGIKLAPEILEPEPV 209
F C +++ +KD + +F Q TL +L EV ++P++ +
Sbjct: 62 SFACGSFKTLLEGKFGINVEKDDPYIHPMRFYPQTRTLEQMLNEVRTGLVSPDVARLGNL 121
Query: 210 DINTI 214
+NTI
Sbjct: 122 IVNTI 126
>SB_32644| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 365
Score = 31.9 bits (69), Expect = 1.0
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 114 LETEERDATSRASFKCPACGKTF---TDLEADQLYDMATQEFQCTFC 157
LE + T+ SF+C CGK F + L L T+ F C +C
Sbjct: 240 LEQHKSIHTNEKSFECKECGKAFKRSSTLSTHMLIHSDTRPFPCQYC 286
>SB_4879| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 31.9 bits (69), Expect = 1.0
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 128 KCPACGKTFTDLEADQLYDMATQEFQCTFCSAVVDED------MSALPKK 171
KC CGK ++ + + +E++C+ C VV D + ALPKK
Sbjct: 167 KCETCGKRVDMMDRKEGEEHVCEEYKCSVCKEVVPPDHLCYVTVDALPKK 216
>SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 31.9 bits (69), Expect = 1.0
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 124 RASFKCPACGKTF---TDLEADQLYDMATQEFQCTFCS 158
R +CP CGK+ TDL + + F+CT CS
Sbjct: 370 RQDVECPTCGKSLGSKTDLNRHAVVHSGEKPFKCTICS 407
>SB_56660| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 917
Score = 31.5 bits (68), Expect = 1.3
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 114 LETEERDATSRASFKCPACGKTF---TDLEADQLYDMATQEFQCTFC 157
L+T R T + ++C ACGK F T L+A + + F+C C
Sbjct: 437 LKTHLRIHTGQKPYECDACGKCFTRKTHLKAHLMMHSGQKPFKCDVC 483
>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1041
Score = 31.5 bits (68), Expect = 1.3
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 114 LETEERDATSRASFKCPACGKTF---TDLEADQLYDMATQEFQCTFC 157
L + ER T FKCP C + F L+ L + ++C FC
Sbjct: 835 LASHERTHTGEKPFKCPECQRAFCRADGLQCHMLVHNKKKMYKCNFC 881
Score = 30.7 bits (66), Expect = 2.3
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 114 LETEERDATSRASFKCPACGKTFTD---LEADQLYDMATQEFQCTFC 157
LE T FKC CG+ F+D +E L T+ ++C +C
Sbjct: 891 LEKHIYSHTGVKPFKCEYCGRAFSDSLSIEKHLLVHTGTKPYKCQYC 937
>SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 594
Score = 31.5 bits (68), Expect = 1.3
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 88 KVNYYFINYKTFVNVVKYKLDLMRKRLETEERDATSRASFKCPACGKTFT---DLEADQL 144
K++ ++ K+FV + K + L + T F C CGKTF +L L
Sbjct: 427 KLHTQGVDEKSFVCEICGKGLRTKSSLRDHRKTHTDNKPFVCEECGKTFRANHNLVNHVL 486
Query: 145 YDMATQEFQCTFCSAVVDEDMSALPKK 171
A++ F C C + AL +K
Sbjct: 487 THAASRMFHCVKCGTGFGPSVRALKRK 513
>SB_37978| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 487
Score = 31.1 bits (67), Expect = 1.8
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 110 MRKRLETEERDATSRASFKCPACGKTFT---DLEADQLYDMATQEFQCTFC 157
++ L + + ++ +FKC CGK FT L QL T+ ++C C
Sbjct: 386 LQSPLMSHMKTHSNEKNFKCETCGKAFTHRNTLARHQLIHSGTRPYKCEEC 436
Score = 29.1 bits (62), Expect = 7.1
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 127 FKCPACGKTFT---DLEADQLYDMATQEFQCTFCS 158
+KC CGKTFT DL+ + ++C CS
Sbjct: 431 YKCEECGKTFTQTNDLKRHSRIHTGIRPYKCHVCS 465
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 30.3 bits (65), Expect = 3.1
Identities = 18/53 (33%), Positives = 23/53 (43%)
Query: 206 PEPVDINTIRGLTSKQSALRPGGEQWSGEATRNQGMLVEETRVDVTIGDDKPA 258
P P +GL S QS+ PG + S T Q T+ V I D KP+
Sbjct: 1014 PLPSSYQNKQGLISGQSSGLPGNSKLSATGTNQQNSSQATTKKTVEIVDKKPS 1066
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 29.9 bits (64), Expect = 4.1
Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 61 ARISILKNDKFIQVRLKMETGLDGKAQKVNYYFINYKTFVNVVKYKLDLMRKRLETEERD 120
A ++ ++ DK + + ++ DG+ + + +Y +V +K+ L+ R
Sbjct: 335 AELNWIQRDKSYRNNVAVQNNHDGRMED-HLEEPDYSITCHVC-HKIYSRPSTLKAHLRV 392
Query: 121 ATSRASFKCPACGKTFT---DLEADQLYDMATQEFQCTFC 157
T + F+CP C K+F+ +L+A + F+C C
Sbjct: 393 HTGKKPFRCPTCQKSFSQDANLKAHLRVHSKEKPFKCHIC 432
>SB_34398| Best HMM Match : eIF-3c_C (HMM E-Value=0.91)
Length = 278
Score = 29.5 bits (63), Expect = 5.4
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 51 LLKFERKMLRARISILKNDKFIQVRLKMETGLD 83
LLK E K+LR+++ L +DK +VR ET +D
Sbjct: 89 LLKEENKVLRSQVDGLAHDKTGEVRSVAETSVD 121
>SB_24580| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 366
Score = 29.5 bits (63), Expect = 5.4
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 112 KRLETEERDATSRASFKCPACGKTFTD---LEADQLYDMATQEFQCTFCSAVVDE 163
+RL+T R + + +KC CGK F++ L+ + + ++C C E
Sbjct: 271 ERLKTHLRIHSGQKPYKCDVCGKCFSESRNLKRHLMIHSGQKPYKCDVCGKCFSE 325
>SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 29.5 bits (63), Expect = 5.4
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 116 TEERDATSRASFKCPACGKTFT--DLEADQLY---DMATQEFQCTFCSAVVDE 163
T+ S+ +KC C K++T + D +Y + T+ ++C C V D+
Sbjct: 664 TKHTTTHSKKPYKCNVCDKSYTRQKMLTDHMYSHEESGTKIYRCVLCDDVFDQ 716
Score = 28.7 bits (61), Expect = 9.4
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 122 TSRASFKCPACGKTFTD---LEADQLYDMATQEFQCTFC 157
T + FKCP C K F L + Q+ A++ ++C C
Sbjct: 559 TEKRPFKCPNCSKAFKTSYALTSHQVTHSASKPYKCQEC 597
>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1498
Score = 29.5 bits (63), Expect = 5.4
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 119 RDATSRASFKCPACGKTFTD---LEADQLYDMATQEFQCTFCS 158
R +++SF+C CGK F+ L+ +L + +F C C+
Sbjct: 1306 RSHQTQSSFECTECGKLFSGNKALKRHRLVHTSGSKFSCAICN 1348
>SB_59654| Best HMM Match : LIM (HMM E-Value=0.0026)
Length = 56
Score = 29.1 bits (62), Expect = 7.1
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 128 KCPACGKTFTDLEADQLYDMATQE--FQCTFCSAVVD 162
KCP C KT E L M + F CT C+ +D
Sbjct: 11 KCPKCDKTVYSAEGQALLGMTFHKRCFTCTTCNKSLD 47
>SB_21510| Best HMM Match : zf-C2H2 (HMM E-Value=6.3e-07)
Length = 229
Score = 29.1 bits (62), Expect = 7.1
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 127 FKCPACGKTFTDLE--ADQLYDMATQEFQCTFC 157
FKC CGK FT+ D + + +QC+ C
Sbjct: 37 FKCEQCGKCFTEAARLKDHILHTGEKPYQCSQC 69
>SB_8254| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 684
Score = 29.1 bits (62), Expect = 7.1
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 105 YKLDLMRKR------LETEERDATSRASFKCPACGKTF 136
YK DL KR L R + +FKC CGKTF
Sbjct: 366 YKCDLCEKRFTQLGHLNVHRRIHSGEDAFKCDRCGKTF 403
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 28.7 bits (61), Expect = 9.4
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 120 DATSRASFKCPACGKTFTDLEADQLYDMATQEFQCTFCSAVVDEDMSALPKKDSRLLLAK 179
D + KCP C K F ++++ +M +C ++ VD+ + + P D R +
Sbjct: 243 DKLDNSESKCPVCSKVFPATDSEE--EMNAHALKCLENTSTVDQVIESDP-TDPRSSHSL 299
Query: 180 FNEQLE 185
+Q+E
Sbjct: 300 LRDQIE 305
>SB_20827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 419
Score = 28.7 bits (61), Expect = 9.4
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 127 FKCPACGKTFTDLEADQLY---DMATQEFQCTFC 157
F+C CGK F Q++ MA + +QC +C
Sbjct: 304 FRCGQCGKAFAQKSVLQVHVCTRMANKPYQCGYC 337
>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
Length = 1078
Score = 28.7 bits (61), Expect = 9.4
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 128 KCPACGKTFTD---LEADQLYDMATQEFQCTFC 157
+C +C + FT LE +L+ + +E++CT C
Sbjct: 430 RCRSCKRGFTTAEKLEEHELFHLGLKEYKCTLC 462
>SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 495
Score = 28.7 bits (61), Expect = 9.4
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 120 DATSRASFKCPACGKTFTDLEADQLYDMATQEFQCTFCSAVVDEDMSALPKKDSRLLLAK 179
D + KCP C K F ++++ +M +C ++ VD+ + + P D R +
Sbjct: 243 DKLDNSESKCPVCSKVFPATDSEE--EMNAHALKCLENTSTVDQVIESDP-TDPRSSHSL 299
Query: 180 FNEQLE 185
+Q+E
Sbjct: 300 LRDQIE 305
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.132 0.368
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,153,138
Number of Sequences: 59808
Number of extensions: 454734
Number of successful extensions: 1470
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1403
Number of HSP's gapped (non-prelim): 83
length of query: 421
length of database: 16,821,457
effective HSP length: 84
effective length of query: 337
effective length of database: 11,797,585
effective search space: 3975786145
effective search space used: 3975786145
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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