Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000355-TA|BGIBMGA000355-PA|IPR002853|Transcription
factor TFIIE, alpha subunit
         (421 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    29   0.098
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    27   0.30 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   3.7  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 0.098
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 112 KRLETEERDATSRASFKCPACGKTF---TDLEADQLYDMATQEFQCTFC 157
           K+L+   R  T    + C  CGK+F     L+  Q+     + ++CT C
Sbjct: 217 KQLKVHTRTHTGEKPYTCDICGKSFGYNHVLKLHQVAHYGEKVYKCTLC 265



 Score = 25.8 bits (54), Expect = 0.69
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)

Query: 127 FKCPACGKTF-TDLEADQLYDMATQE--FQCTFCS 158
           ++C  CGKTF       + Y   T E  +QC +CS
Sbjct: 92  YRCNICGKTFAVPARLTRHYRTHTGEKPYQCEYCS 126



 Score = 23.0 bits (47), Expect = 4.9
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 119 RDATSRASFKCPACGKTFT 137
           R  T    + C ACGK FT
Sbjct: 196 RTHTGEKPYVCKACGKGFT 214



 Score = 22.2 bits (45), Expect = 8.5
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 113 RLETEERDATSRASFKCPACGKTFT---DLEADQLYDMATQEFQCTFC 157
           RL    R  T    ++C  C K+F+   +L   +      + ++C  C
Sbjct: 106 RLTRHYRTHTGEKPYQCEYCSKSFSVKENLSVHRRIHTKERPYKCDVC 153


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 27.1 bits (57), Expect = 0.30
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 118 ERDATSRASFKCPACGKTFT---DLEADQLYDMATQEFQCTFC 157
           ER  T    F+CP C K FT    L+         + + C+ C
Sbjct: 1   ERTHTGEKPFECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHC 43


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 15/63 (23%), Positives = 25/63 (39%)

Query: 208 PVDINTIRGLTSKQSALRPGGEQWSGEATRNQGMLVEETRVDVTIGDDKPARDAGALRKE 267
           P  +N I G T K   L      WS    ++   +V   ++ +   D     D+G + + 
Sbjct: 88  PSTLNVISGKTGKGGRLLKPYPDWSFAEFKDCSKIVSAFKIAIDKFDRLWVLDSGLVNRT 147

Query: 268 RPV 270
            PV
Sbjct: 148 VPV 150


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,477
Number of Sequences: 429
Number of extensions: 4182
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 7
length of query: 421
length of database: 140,377
effective HSP length: 59
effective length of query: 362
effective length of database: 115,066
effective search space: 41653892
effective search space used: 41653892
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)