GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000355-TA|BGIBMGA000355-PA|IPR002853|Transcription
factor TFIIE, alpha subunit
         (421 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    27   0.25 
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    26   0.58 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    24   2.3  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    23   3.1  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   3.1  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    23   5.4  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    23   5.4  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   5.4  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    22   7.1  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   7.1  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 27.1 bits (57), Expect = 0.25
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 102 VVKYKLDLMRKRLETEERDATSRASFKCPACGKTFT 137
           V+ +++   +  L+   R  T    FKC  CG+ FT
Sbjct: 138 VICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFT 173


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 25.8 bits (54), Expect = 0.58
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 114 LETEERDATSRASFKCPACGKTFT---DLEADQLYDMATQEFQCTFC 157
           L+  ER  T    F+C  C K FT    L+         + ++C  C
Sbjct: 150 LQNHERTHTGEKPFECQECHKRFTRDHHLKTHMRLHTGERPYRCEHC 196


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 48  ICELLKFERKMLRARISILKNDKFIQVRLKMETGLDGKAQKVNYYFINYK 97
           IC   KF+  M+  R S L ND F  + L + + +   A +     + YK
Sbjct: 472 ICVAYKFDAAMMALRTSFLVND-FGFIWLVLSSTVRAYASRAFKKIVTYK 520


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 118 ERDATSRASFKCPACGKTFT---DLEADQLYDMATQEFQCTFC 157
           ER  T    F+C  C K FT    L+         + ++C  C
Sbjct: 1   ERTHTGEKPFECQECHKRFTRDHHLKTHMRLHTGERPYRCEHC 43


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 111 RKRLETEERDATSRASFKCPACGKTFTDLE-ADQLYD 146
           RK  + E RD    A+ +CP     F D E  D+ Y+
Sbjct: 21  RKHQKQESRDEEYEATDQCPEKYGFFADAEQCDKYYE 57


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 8/19 (42%), Positives = 9/19 (47%)

Query: 118 ERDATSRASFKCPACGKTF 136
           ER  T    + C  CGK F
Sbjct: 99  ERTHTDERPYSCDICGKAF 117


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 105 YKLDLMRKRLETEERDATSRASFKCPACGKTFTDLE 140
           Y + +M K   +         +F+ P+C +TF  LE
Sbjct: 229 YTVQIMAKSESSPFESLKKSLNFRTPSCLETFHTLE 264


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 9/23 (39%), Positives = 10/23 (43%)

Query: 114 LETEERDATSRASFKCPACGKTF 136
           L+   R  T    F CP C K F
Sbjct: 362 LQRHLRTHTGEKRFACPICNKRF 384


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 114 LETEERDATSRASFKCPACGKTFTDLEADQLY---DMATQEFQCTFCSAVVDEDMSALPK 170
           L    R  +    F+CP C + F+   +   +       + ++C  C      D S L K
Sbjct: 37  LTAHVRTHSGEKPFRCPVCDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAF-SDSSTLTK 95


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 114 LETEERDATSRASFKCPACGKTFTDLEADQLY---DMATQEFQCTFCSAVVDEDMSALPK 170
           L    R  +    F+CP C + F+   +   +       + ++C  C      D S L K
Sbjct: 293 LTAHVRTHSGEKPFRCPVCDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAF-SDSSTLTK 351


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.132    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,014
Number of Sequences: 317
Number of extensions: 2890
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 11
length of query: 421
length of database: 114,650
effective HSP length: 59
effective length of query: 362
effective length of database: 95,947
effective search space: 34732814
effective search space used: 34732814
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)