Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000355-TA|BGIBMGA000355-PA|IPR002853|Transcription
factor TFIIE, alpha subunit
(421 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0299 + 15487202-15487227,15487369-15487491,15488277-154883... 48 1e-05
12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322,194... 45 1e-04
11_01_0223 + 1746203-1746228,1746344-1746463,1746942-1747062,174... 40 0.003
11_01_0222 + 1740828-1740830,1741109-1741218,1741304-1741487,174... 38 0.020
06_01_0424 + 3041296-3041860,3042701-3042786,3042858-3043147,304... 35 0.14
11_04_0224 + 15059904-15059910,15059955-15060185,15060345-150604... 31 1.7
09_02_0202 + 5735613-5736170 30 3.0
01_06_1058 - 34147025-34147069,34147190-34147339,34147983-341481... 30 3.0
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 29 5.3
11_01_0335 + 2512729-2512813,2513151-2513222,2514006-2514129,251... 29 7.0
>08_02_0299 +
15487202-15487227,15487369-15487491,15488277-15488397,
15488572-15488700,15489954-15490063,15490139-15490322,
15491155-15491346,15492190-15492411,15492501-15492687,
15494009-15494103
Length = 462
Score = 48.4 bits (110), Expect = 1e-05
Identities = 36/165 (21%), Positives = 74/165 (44%), Gaps = 24/165 (14%)
Query: 32 LIVDMLVRNPCMKEDDICELLKFERKMLRARISILKNDKFIQVRLKMETGL--------- 82
+++D L R ++E+D+ + LK K LR + + +K + + E+
Sbjct: 43 VVLDALTRRQWVREEDLAKALKLHSKQLRRILRFFEEEKLVTRDHRKESAKGAKIYSAAA 102
Query: 83 ----DGKA------QKV-----NYYFINYKTFVNVVKYKLDLMRKRLETEERDATSRASF 127
DG++ +KV +Y ++Y +VV+Y++ M+K+L+ E + +
Sbjct: 103 AAAGDGQSITKEGEEKVKMHTHSYCCLDYAQICDVVRYRIHRMKKKLKDELDSRNTIQHY 162
Query: 128 KCPACGKTFTDLEADQLYDMATQEFQCTFCSAVVDEDMSALPKKD 172
CP C K ++ +A QL + F C C+ + + L ++
Sbjct: 163 ICPNCKKRYSAFDALQLISYTDEYFHCENCNGELVAESDKLASEE 207
>12_01_0268 -
1941515-1941534,1941868-1942057,1942155-1942322,
1943425-1943568,1944284-1944443,1944512-1944621,
1944900-1945019,1945649-1945766,1946610-1946729,
1947228-1947285,1947590-1947723,1949332-1949414,
1949544-1949786,1949851-1949976,1950075-1951562
Length = 1093
Score = 44.8 bits (101), Expect = 1e-04
Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 20/146 (13%)
Query: 32 LIVDMLVRNPCMKEDDICELLKFERKMLRARISILKNDKFIQ-VRLKMETGLD------- 83
+++D L R + + + + LK ++K L + L+ F++ +K +TG +
Sbjct: 744 MVLDALTRYQWVPDTHLAKSLKVQKKKLCLILEFLEKQMFVRRCEVKAKTGRNVSNTATT 803
Query: 84 ------GKAQKVN------YYFINYKTFVNVVKYKLDLMRKRLETEERDATSRASFKCPA 131
+ +KV Y INY +VV+Y + M L+++ + + + CP
Sbjct: 804 AGVSAIPRNEKVKSKHPKWYCCINYAKICSVVRYHIMQMEANLKSQLENTNTVDKYTCPN 863
Query: 132 CGKTFTDLEADQLYDMATQEFQCTFC 157
CGK+F+ + L F C C
Sbjct: 864 CGKSFSAFDVKDLVSCTDGNFYCESC 889
>11_01_0223 +
1746203-1746228,1746344-1746463,1746942-1747062,
1747441-1747572,1748266-1748375,1748465-1748648,
1749153-1749305,1749672-1749818
Length = 330
Score = 40.3 bits (90), Expect = 0.003
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 80 TGLDGKAQKVN--YYFINYKTFVNVVKYKLDLMRKRLETEERDATSRASFKCPACGKTFT 137
T + GK + + Y ++Y +V Y++ M+K+L+ E ++ CP C + ++
Sbjct: 113 TNVAGKLKMIMQPYCCLHYGQVYDVTLYRIHEMKKKLKDELDGNYMIQNYVCPNCERRYS 172
Query: 138 DLEADQLYDMATQEFQCTFCSAVVDEDMSAL 168
L A L F C C+ + +D L
Sbjct: 173 SLNALDLVSHIDNNFHCKHCNEELSQDFGDL 203
>11_01_0222 +
1740828-1740830,1741109-1741218,1741304-1741487,
1742159-1742344,1742631-1742849,1742958-1743171,
1743549-1743601,1743839-1743874
Length = 334
Score = 37.5 bits (83), Expect = 0.020
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 101 NVVKYKLDLMRKRLETEERDATSRASFKCPACGKTFTDLEADQLYDMATQEFQCTFC 157
+VV+Y++ MRK+L+ D + + CP C + ++ +A QL F C C
Sbjct: 4 DVVRYRIHRMRKKLKDGLDDRDTVQHYVCPNCKRRYSAFDALQLVSDMDDYFHCEHC 60
>06_01_0424 +
3041296-3041860,3042701-3042786,3042858-3043147,
3043225-3043285,3043773-3043868,3044448-3044603,
3044811-3044987
Length = 476
Score = 34.7 bits (76), Expect = 0.14
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 11/125 (8%)
Query: 147 MATQEFQCTFCSAVVDEDMSALPKKDSRLLLAKFNEQLETLYILLREVEGIKLAPEILEP 206
+A FQC C A DE + ++D+R +E+L + L+ + + LA +
Sbjct: 81 LAAGAFQCKECVADCDEALGRRRRRDAR---CGCDEKLAADALFLKALALLNLAVCAADH 137
Query: 207 EPVDINTIRGLTSKQSALRPGGEQWSGE---ATRNQGMLVEETRVDVTIGDDKPARDAGA 263
EP I + G LRPG ++ + A RN+ E+ R+D R
Sbjct: 138 EPA-ITALEG----SLELRPGSKETRAKLDMAKRNRDAFAEQERLDQEAAKTHRDRGLEL 192
Query: 264 LRKER 268
LRK++
Sbjct: 193 LRKKK 197
>11_04_0224 +
15059904-15059910,15059955-15060185,15060345-15060424,
15060497-15060547,15060548-15060670,15062151-15062184,
15062363-15062441,15062779-15062848,15075787-15075889,
15076247-15076284,15076449-15076550,15077027-15077107,
15077506-15077657,15077731-15077857,15078193-15078311,
15078636-15078749,15079001-15079214
Length = 574
Score = 31.1 bits (67), Expect = 1.7
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 63 ISILKNDKFIQVRLKMETGLDGKAQKVNYYFINYKTFVNVVKYKLDLMRK 112
+ I NDK ++ L + G GK + NY K + V+Y L LMR+
Sbjct: 409 LKIWANDKTVRESLGVHKGTVGKWTRCNYDIDYIKDVYSTVEYHLTLMRE 458
>09_02_0202 + 5735613-5736170
Length = 185
Score = 30.3 bits (65), Expect = 3.0
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 219 SKQSALRPGGEQWSGEATRNQGMLVEETRVDVTIGDDKPARDAGALRKERPVWMVEST 276
+K++A G W+G + + V E VD D ARDA RK + VE+T
Sbjct: 13 AKEAAANVGASAWAG---KEKTKAVVEATVDKARAPDTAARDAADARKADRIREVEAT 67
>01_06_1058 -
34147025-34147069,34147190-34147339,34147983-34148117,
34148391-34148449,34149142-34149258,34149448-34149625,
34149715-34149798,34150133-34150201,34150385-34150525,
34150781-34150873,34151338-34151466,34152033-34152371,
34152624-34152674
Length = 529
Score = 30.3 bits (65), Expect = 3.0
Identities = 33/180 (18%), Positives = 74/180 (41%), Gaps = 10/180 (5%)
Query: 40 NPCMKEDDICELLKFERKMLRARISILKNDKFIQVR---LKMETGLDG------KAQKVN 90
N + ++I E + + + + +L+ + + VR K E GL G +A++
Sbjct: 76 NQIIDPEEIHEAVPLKEIVAKETAQLLEQRRRLSVRDLKEKFEKGLSGASKLSEEAKRRE 135
Query: 91 YYFINYKTFVNVVKYKLDLMRKRLETEERDATSRASFKCPACGKTFTDLEADQLYDMATQ 150
++ + + ++ LD ++ R+ RD A A T E + +Y+ A
Sbjct: 136 AASLDRQVLLKKLRDVLDTLKGRVAGRNRDDADEAISLVEALAVQLTQREGELIYEKAEV 195
Query: 151 EFQCTFCSAVVDEDMSALPKKDSRLLLAKFNEQLETLYILLREVEGIKLAPEILEPEPVD 210
+ +F ED + +++ L LA+ + + I+ + ++ A E E ++
Sbjct: 196 KKLASFLKQAT-EDARKVAEEERALALAEIEKARTAIAIVEKGLQEHDAASSSREKEEIE 254
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 29.5 bits (63), Expect = 5.3
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 83 DGKAQKVNYYFINYKTFVNVVKYKLDLMRKRLETEERDATSRASFKCPACGKTFTDLEAD 142
D A K N F+ + N V M+K E+ + P C KTFT++E
Sbjct: 144 DETATKSNRQFVCKEEGCNKVFKYASKMKKHEESHVKLDYVEVVCCEPGCMKTFTNVECL 203
Query: 143 QLYDMATQEF-QCTFC 157
+ ++ A ++ QC C
Sbjct: 204 RAHNQACHQYVQCDIC 219
>11_01_0335 +
2512729-2512813,2513151-2513222,2514006-2514129,
2514197-2514284,2514393-2514530,2514678-2514765,
2514854-2514974,2515080-2515260
Length = 298
Score = 29.1 bits (62), Expect = 7.0
Identities = 21/108 (19%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 152 FQCTFCSAVVDEDMSALPKKDSRLLLAKFNEQLETLYILLREVEGIKLAPEILEPEPVDI 211
+ C +C+ + ++ L DS+ L EQ E L+ L++ I +++ P+ +
Sbjct: 33 YGCMYCARSYQDTLATLKFADSKTLK---EEQREELFESLKDNSSIGWEVDVICPKELSA 89
Query: 212 NTIRGLTSKQSALRPGGEQWSGEATRNQGMLVEETRVDVTIGDDKPAR 259
++ + + + + G+L+ E +D T+GD + R
Sbjct: 90 KMLKRSKVNLNEISHNSAMGLVKRALDMGVLLAEVYID-TVGDAEKYR 136
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.132 0.368
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,319,810
Number of Sequences: 37544
Number of extensions: 384767
Number of successful extensions: 1005
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 999
Number of HSP's gapped (non-prelim): 11
length of query: 421
length of database: 14,793,348
effective HSP length: 84
effective length of query: 337
effective length of database: 11,639,652
effective search space: 3922562724
effective search space used: 3922562724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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