GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000355-TA|BGIBMGA000355-PA|IPR002853|Transcription
factor TFIIE, alpha subunit
         (421 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    27   0.96 
CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein...    25   2.9  
AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/T...    25   2.9  
Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein...    24   6.8  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 199 LAPEILEPEPVDINTIRGLTSKQSALRPGGEQWSGEATRNQGMLVEETRVDVTIGD--DK 256
           L  EI + +    N  + L   +  +    ++ S  AT +Q +L E+T++D+TI D  D+
Sbjct: 256 LTQEIQKAQDRLKNAQKALKDAKKDVVTAKDEKSVLATEHQQLLREKTKLDLTISDLSDE 315

Query: 257 PARD-AGALRKERPVWMVESTIASNEQ 282
              D     R E+ +  ++ TIA  E+
Sbjct: 316 VQGDNKSKERAEQELERLKITIAEKEK 342


>CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein
           protein.
          Length = 415

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 122 TSRASFKCPACGKTFTDL 139
           T+   ++CPACG  F +L
Sbjct: 287 TNHHLYRCPACGNLFVEL 304


>AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/Thr
            phosphatase protein.
          Length = 1977

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 219  SKQSALRPGGEQWSGEATRNQGMLVEETRVDVTIGDDKPARDAGALRKERPVWMVESTIA 278
            S QS L   G+    +         ++   D T+G+D+ A + G  R   P    +++ A
Sbjct: 1180 SNQSTLALTGDTLPKDQPDYGNQQQQQQPQDSTLGNDRGAGEGGGSRSVPPSTFAQNSNA 1239

Query: 279  SN 280
            SN
Sbjct: 1240 SN 1241


>Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein
           protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 46  DDICELLKFERKMLRARISILKNDKFIQVRLK-METGLDGKAQKVNYYFINYKTFVNVVK 104
           ++I   L  E + LR  +          VRLK +E     K  + N     Y+T+++++K
Sbjct: 328 EEILPTLALETEKLRRTVEQTGKSSAELVRLKKLEEKFVSKKDRWNTN--TYRTYLHMIK 385

Query: 105 YKLDLMRKRLETEER 119
            K    + R+E E +
Sbjct: 386 TKGKFGQHRMEMERK 400


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.315    0.132    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 362,507
Number of Sequences: 2123
Number of extensions: 13052
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 4
length of query: 421
length of database: 516,269
effective HSP length: 66
effective length of query: 355
effective length of database: 376,151
effective search space: 133533605
effective search space used: 133533605
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)