Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000355-TA|BGIBMGA000355-PA|IPR002853|Transcription
factor TFIIE, alpha subunit
(421 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82287-4|CAB05314.1| 433|Caenorhabditis elegans Hypothetical pr... 150 2e-36
Y08816-1|CAA70050.2| 433|Caenorhabditis elegans TFIIE-alpha pro... 150 2e-36
AF003142-5|ABQ13067.1| 474|Caenorhabditis elegans Hypothetical ... 33 0.38
AF003142-4|AAK73888.1| 856|Caenorhabditis elegans Hypothetical ... 33 0.38
AC024810-9|AAF60766.1| 547|Caenorhabditis elegans Hypothetical ... 33 0.50
AL032641-4|CAA21647.1| 454|Caenorhabditis elegans Hypothetical ... 32 0.88
Z50794-6|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical pr... 31 2.0
AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha ... 31 2.0
Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical pr... 30 2.7
Z78539-8|CAB01726.2| 560|Caenorhabditis elegans Hypothetical pr... 30 2.7
AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein. 30 2.7
Z83227-4|CAB05729.2| 336|Caenorhabditis elegans Hypothetical pr... 30 3.5
Z79755-9|CAB02113.1| 270|Caenorhabditis elegans Hypothetical pr... 30 3.5
U88311-9|AAB42349.3| 407|Caenorhabditis elegans Kinesin cargo a... 30 3.5
U63996-1|AAC47234.1| 336|Caenorhabditis elegans zinc finger pro... 30 3.5
DQ178243-1|ABA18182.1| 407|Caenorhabditis elegans kinesin 1 car... 30 3.5
AF169201-1|AAF01678.1| 270|Caenorhabditis elegans CES-1 protein. 30 3.5
AC084154-4|AAK29868.1| 767|Caenorhabditis elegans Hypothetical ... 30 3.5
U88173-11|AAK21390.1| 329|Caenorhabditis elegans Hypothetical p... 29 4.7
AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical... 29 6.2
AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical ... 29 6.2
Z50070-2|CAB54253.1| 1069|Caenorhabditis elegans Hypothetical pr... 29 8.2
Z50070-1|CAA90399.1| 1105|Caenorhabditis elegans Hypothetical pr... 29 8.2
U23454-8|AAC46522.2| 249|Caenorhabditis elegans Hypothetical pr... 29 8.2
L14429-7|AAK93871.1| 285|Caenorhabditis elegans Coenzyme q (ubi... 29 8.2
AC024777-3|AAF60562.3| 563|Caenorhabditis elegans Hypothetical ... 29 8.2
>Z82287-4|CAB05314.1| 433|Caenorhabditis elegans Hypothetical
protein ZK550.4 protein.
Length = 433
Score = 150 bits (363), Expect = 2e-36
Identities = 86/300 (28%), Positives = 161/300 (53%), Gaps = 11/300 (3%)
Query: 2 TEERYVTEVPSSLKQLARLVVRGFYTIEDALIVDMLVRNPCMKEDDICELLKFERKMLRA 61
TE + V E+P +L + +VV+ F++ E +IV ++R C++E+++ ++F++KMLR
Sbjct: 15 TETQVVDEIPEALNTILLMVVKNFFSSEHFIIVYHIMRAQCIREENLKARIQFDQKMLRQ 74
Query: 62 RISILKNDKFIQVRLKMETGLDGKAQKVNYYFINYKTFVNVVKYKLDLMRKRLETEERDA 121
++ LK +K ++ R + + + + +Y+INY+ +NVV+YK+D MR++LE+ E+
Sbjct: 75 LLASLKAEKLVKERTITQKNENNRTVSIIFYYINYRAVLNVVRYKIDHMRQKLESREQMD 134
Query: 122 TSRASFKCPACGKTFTDLEADQLYDMATQEFQCTFCSAVVDEDMSALPKKDSRLLLAKFN 181
T+RA ++C AC ++ LE +++ D + C C V D + +P + +R +A+FN
Sbjct: 135 TNRAHYRCGACQSSYDMLEINRILDAESGRLICWRCHGDVLADETVVPSRTTRTAVARFN 194
Query: 182 EQLETLYILLREVEGIKLAPEILEPE---PVDINTIRGLTSKQSALRPGGE-----QWSG 233
EQ+ L+ + + GI+LAP +LEP+ ++ + L +Q GG Q G
Sbjct: 195 EQMTPLFSHICALNGIQLAPHLLEPDITKYLEDDKELQLQQQQMDFTSGGGGGGRIQLGG 254
Query: 234 EATRNQGML-VEETRVDVTIGDDKPARDAGALRKER--PVWMVESTIASNEQSDSAHSTD 290
A Q + + D D + G + + + P W+ ++ I E S + H D
Sbjct: 255 VAHSYQNIASINYQNGDAVFVDLNADINKGPVEEAKIMPEWLKDNAIGGGEASHNEHVLD 314
>Y08816-1|CAA70050.2| 433|Caenorhabditis elegans TFIIE-alpha
protein protein.
Length = 433
Score = 150 bits (363), Expect = 2e-36
Identities = 86/300 (28%), Positives = 161/300 (53%), Gaps = 11/300 (3%)
Query: 2 TEERYVTEVPSSLKQLARLVVRGFYTIEDALIVDMLVRNPCMKEDDICELLKFERKMLRA 61
TE + V E+P +L + +VV+ F++ E +IV ++R C++E+++ ++F++KMLR
Sbjct: 15 TETQVVDEIPEALNTILLMVVKNFFSSEHFIIVYHIMRAQCIREENLKARIQFDQKMLRQ 74
Query: 62 RISILKNDKFIQVRLKMETGLDGKAQKVNYYFINYKTFVNVVKYKLDLMRKRLETEERDA 121
++ LK +K ++ R + + + + +Y+INY+ +NVV+YK+D MR++LE+ E+
Sbjct: 75 LLASLKAEKLVKERTITQKNENNRTVSIIFYYINYRAVLNVVRYKIDHMRQKLESREQMD 134
Query: 122 TSRASFKCPACGKTFTDLEADQLYDMATQEFQCTFCSAVVDEDMSALPKKDSRLLLAKFN 181
T+RA ++C AC ++ LE +++ D + C C V D + +P + +R +A+FN
Sbjct: 135 TNRAHYRCGACQSSYDMLEINRILDAESGRLICWRCHGDVLADETVVPSRTTRTAVARFN 194
Query: 182 EQLETLYILLREVEGIKLAPEILEPE---PVDINTIRGLTSKQSALRPGGE-----QWSG 233
EQ+ L+ + + GI+LAP +LEP+ ++ + L +Q GG Q G
Sbjct: 195 EQMTPLFSHICALNGIQLAPHLLEPDITKYLEDDKELQLQQQQMDFTSGGGGGGRIQLGG 254
Query: 234 EATRNQGML-VEETRVDVTIGDDKPARDAGALRKER--PVWMVESTIASNEQSDSAHSTD 290
A Q + + D D + G + + + P W+ ++ I E S + H D
Sbjct: 255 VAHSYQNIASINYQNGDAVFVDLNADINKGPVEEAKIMPEWLKDNAIGGGEASHNEHVLD 314
>AF003142-5|ABQ13067.1| 474|Caenorhabditis elegans Hypothetical
protein F57C9.4c protein.
Length = 474
Score = 33.1 bits (72), Expect = 0.38
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 111 RKRLETEERDATSRASFKCPACGKTFTD---LEADQLYDMATQEFQCTFCSAVV 161
R L+T R T ++C C K+FTD L L +++QC C +
Sbjct: 404 RNFLKTHIRTHTGERPYRCDTCSKSFTDASTLRRHGLVHTGEKKYQCPVCGRAI 457
>AF003142-4|AAK73888.1| 856|Caenorhabditis elegans Hypothetical
protein F57C9.4b protein.
Length = 856
Score = 33.1 bits (72), Expect = 0.38
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 111 RKRLETEERDATSRASFKCPACGKTFTD---LEADQLYDMATQEFQCTFCSAVV 161
R L+T R T ++C C K+FTD L L +++QC C +
Sbjct: 786 RNFLKTHIRTHTGERPYRCDTCSKSFTDASTLRRHGLVHTGEKKYQCPVCGRAI 839
>AC024810-9|AAF60766.1| 547|Caenorhabditis elegans Hypothetical
protein Y54E10A.12 protein.
Length = 547
Score = 32.7 bits (71), Expect = 0.50
Identities = 40/198 (20%), Positives = 91/198 (45%), Gaps = 11/198 (5%)
Query: 32 LIVDMLVRNPCMKEDDICELLKFERKMLRARISILKNDKFIQVRLKMETGLDGKAQKVNY 91
L+ ++ + + +KE+ K + +L+ + I K+ ++ + + ++ + QK
Sbjct: 131 LLKELSIVDSSLKEEK-ASFEKTQSALLKEKGKIEKDKLMLREEAQKQASMNAEVQKKEL 189
Query: 92 YFINYKTFVNVVKYKLDLMRKRLETEERDATSRASFKCPACGKTFTDLEADQLYD-MAT- 149
+ +N K ++ K+++ E+ + S+ ++ + E+ + D +AT
Sbjct: 190 ESQERLSVLN--KQFMEENEKKVKLEQEELDSKNAYN-DCLQLNIPNAESQMITDQLATL 246
Query: 150 QEFQCTFCSAVVDEDMSALPKKDSRL-LLAKFNEQLETLYILLREVEGIK--LAPEILEP 206
EF + +E M+ +P + + L +F +E+ +L + G++ L LE
Sbjct: 247 DEFYSDLNNNSSNEIMAEIPDFEEIIDLFNQFKSSMESQKDILNTLAGLEEQLGDHQLEI 306
Query: 207 EPV--DINTIRGLTSKQS 222
+ V DIN ++GL KQS
Sbjct: 307 KSVRKDINKLKGLQGKQS 324
>AL032641-4|CAA21647.1| 454|Caenorhabditis elegans Hypothetical
protein Y5F2A.4 protein.
Length = 454
Score = 31.9 bits (69), Expect = 0.88
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 110 MRKRLETEERDATSRASFKCPACGKTF---TDLEADQLYDMATQEFQCTFC 157
M K + + D ++ KC C K F + L+ Q+ + + + CTFC
Sbjct: 26 MHKNVVKSKNDRSASDPLKCSMCDKVFPRLSHLQRHQMTHLNVRNYSCTFC 76
>Z50794-6|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical
protein F59F5.6 protein.
Length = 1139
Score = 30.7 bits (66), Expect = 2.0
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 4 ERYVTEVPSSLKQLARLVVRGFYTIEDALIVDMLVRNPCMK-----EDDICELLKFERKM 58
ER TE+ +SLKQ + R +ED L D ++ + ++ ICE L +R
Sbjct: 250 ERMKTELANSLKQSTEITTRN-AELEDQLTEDAREKHAAQESIVRLKNQICE-LDAQRTD 307
Query: 59 LRARISILKNDKFIQVRLKMETGLDGKAQKVNYYFINYKTFVNVVKYKLDLMRKRLETEE 118
RI+ ++ +F+ + + T + K+ + N V + + K+ +++RLE E
Sbjct: 308 QETRITTFES-RFLTAQ-RESTCIRDLNDKLEHQLANKDAAVRLNEEKVHSLQERLELAE 365
Query: 119 R 119
+
Sbjct: 366 K 366
>AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha
homolog SYD-2 protein.
Length = 1139
Score = 30.7 bits (66), Expect = 2.0
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 4 ERYVTEVPSSLKQLARLVVRGFYTIEDALIVDMLVRNPCMK-----EDDICELLKFERKM 58
ER TE+ +SLKQ + R +ED L D ++ + ++ ICE L +R
Sbjct: 250 ERMKTELANSLKQSTEITTRN-AELEDQLTEDAREKHAAQESIVRLKNQICE-LDAQRTD 307
Query: 59 LRARISILKNDKFIQVRLKMETGLDGKAQKVNYYFINYKTFVNVVKYKLDLMRKRLETEE 118
RI+ ++ +F+ + + T + K+ + N V + + K+ +++RLE E
Sbjct: 308 QETRITTFES-RFLTAQ-RESTCIRDLNDKLEHQLANKDAAVRLNEEKVHSLQERLELAE 365
Query: 119 R 119
+
Sbjct: 366 K 366
>Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical
protein F45G2.6 protein.
Length = 462
Score = 30.3 bits (65), Expect = 2.7
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 120 DATSRASFKCPACGKTF--TDLEADQLYDMATQEFQCTFCSAVV-DEDMSALPKKDSRLL 176
+ T ++S KC CG+ F DLE + C+FC+ + D D PK +++
Sbjct: 102 ECTFKSSLKCEKCGRQFAKNDLEKHRA-KCELNRAVCSFCNKTIRDSDRERHPKTCPQVI 160
Query: 177 LA 178
++
Sbjct: 161 IS 162
>Z78539-8|CAB01726.2| 560|Caenorhabditis elegans Hypothetical
protein C31E10.5 protein.
Length = 560
Score = 30.3 bits (65), Expect = 2.7
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 106 KLDLMRKRLETEERDATSRASFK---CPACGKTFTDLEADQLYDMATQEFQCTFCSAVVD 162
+LD+ E+E+ D T S K P + F E + + + T S +D
Sbjct: 201 ELDISESDFESEDDDGTLVGSIKKDRLPTAEQLFA--EDNSVIKTYHEGLSSTIQSMFID 258
Query: 163 EDMSALPKKDSRLLLAKFNEQLETLYI 189
E++ +L K+ +R A + + E LYI
Sbjct: 259 EELDSLDKRITREARAFYRTRKEHLYI 285
>AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein.
Length = 462
Score = 30.3 bits (65), Expect = 2.7
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 120 DATSRASFKCPACGKTF--TDLEADQLYDMATQEFQCTFCSAVV-DEDMSALPKKDSRLL 176
+ T ++S KC CG+ F DLE + C+FC+ + D D PK +++
Sbjct: 102 ECTFKSSLKCEKCGRQFAKNDLEKHRA-KCELNRAVCSFCNKTIRDSDRERHPKTCPQVI 160
Query: 177 LA 178
++
Sbjct: 161 IS 162
>Z83227-4|CAB05729.2| 336|Caenorhabditis elegans Hypothetical
protein F45B8.4 protein.
Length = 336
Score = 29.9 bits (64), Expect = 3.5
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 114 LETEERDATSRASFKCPACGKTF---TDLEADQLYDMATQEFQCTFC 157
LE ++ S F+C CGKTF + L L T+ + C +C
Sbjct: 141 LEQHQQVHVSDKQFECKQCGKTFKRSSTLSTHLLIHSDTRPYPCEYC 187
>Z79755-9|CAB02113.1| 270|Caenorhabditis elegans Hypothetical
protein F43G9.11 protein.
Length = 270
Score = 29.9 bits (64), Expect = 3.5
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 114 LETEERDATSRASFKCPACGKTFTD---LEADQLYDMATQEFQCTFC 157
L+ R T F C CGK+F D L A L + F+C C
Sbjct: 206 LQGHLRSHTGLRPFSCAHCGKSFADRSNLRAHMLTHTGDKRFECDKC 252
>U88311-9|AAB42349.3| 407|Caenorhabditis elegans Kinesin cargo
adaptor protein 1 protein.
Length = 407
Score = 29.9 bits (64), Expect = 3.5
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 29 EDALIVDMLVRNPCMKEDDICELLKFERKMLRARISILKNDKF 71
+D VD +++ C + +D+ + KF K R +S +KND+F
Sbjct: 76 QDKETVDEIMK--CFRNNDVDGMEKFVEKKTRESVSSMKNDEF 116
>U63996-1|AAC47234.1| 336|Caenorhabditis elegans zinc finger
protein PAG-3 protein.
Length = 336
Score = 29.9 bits (64), Expect = 3.5
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 114 LETEERDATSRASFKCPACGKTF---TDLEADQLYDMATQEFQCTFC 157
LE ++ S F+C CGKTF + L L T+ + C +C
Sbjct: 141 LEQHQQVHVSDKQFECKQCGKTFKRSSTLSTHLLIHSDTRPYPCEYC 187
>DQ178243-1|ABA18182.1| 407|Caenorhabditis elegans kinesin 1 cargo
adaptor alternativevariant a protein.
Length = 407
Score = 29.9 bits (64), Expect = 3.5
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 29 EDALIVDMLVRNPCMKEDDICELLKFERKMLRARISILKNDKF 71
+D VD +++ C + +D+ + KF K R +S +KND+F
Sbjct: 76 QDKETVDEIMK--CFRNNDVDGMEKFVEKKTRESVSSMKNDEF 116
>AF169201-1|AAF01678.1| 270|Caenorhabditis elegans CES-1 protein.
Length = 270
Score = 29.9 bits (64), Expect = 3.5
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 114 LETEERDATSRASFKCPACGKTFTD---LEADQLYDMATQEFQCTFC 157
L+ R T F C CGK+F D L A L + F+C C
Sbjct: 206 LQGHLRSHTGLRPFSCAHCGKSFADRSNLRAHMLTHTGDKRFECDKC 252
>AC084154-4|AAK29868.1| 767|Caenorhabditis elegans Hypothetical
protein Y22D7AR.7 protein.
Length = 767
Score = 29.9 bits (64), Expect = 3.5
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 68 NDKFIQVRLKMETGLDGKA-QKVNYYFINYKTFVNVVKYKLDLMRKRLETEE 118
N +++R ++ G+ G + Y+F N+ TF++ K +D M+ ET+E
Sbjct: 97 NSMIVKLRDTLKFGIIGDMIEMAPYFFKNFDTFLSDFKKLIDAMKALRETKE 148
>U88173-11|AAK21390.1| 329|Caenorhabditis elegans Hypothetical
protein F46F11.8 protein.
Length = 329
Score = 29.5 bits (63), Expect = 4.7
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 165 MSALPKKDSRLLLAKFNEQLETLYILLREVEGIKLAPEILEPEPVDINTIRGLTSKQSA 223
M++LP+K +L ++ E L L I+ + P++ E P INTI +T+ Q+A
Sbjct: 242 MTSLPEKRQKLTVSLLTETL--LKIICKLCNAC--FPDVFEKSPPAINTILAVTTPQNA 296
>AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical
protein Y111B2A.10b protein.
Length = 312
Score = 29.1 bits (62), Expect = 6.2
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 104 KYKLDLMRKRLETEERDATSRASFKCPACGKTFTDLEA-----DQLYDMATQEFQCTFC 157
++K++ ++ ++ + T+ + F C C K F + EA DQ++D++ + +C C
Sbjct: 5 QWKVEQKQQLEDSLLKPHTAGSIFTCVMCSKAFPNAEALQIHTDQVHDLSRLKHRCKLC 63
>AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical
protein Y111B2A.10a protein.
Length = 430
Score = 29.1 bits (62), Expect = 6.2
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 104 KYKLDLMRKRLETEERDATSRASFKCPACGKTFTDLEA-----DQLYDMATQEFQCTFC 157
++K++ ++ ++ + T+ + F C C K F + EA DQ++D++ + +C C
Sbjct: 123 QWKVEQKQQLEDSLLKPHTAGSIFTCVMCSKAFPNAEALQIHTDQVHDLSRLKHRCKLC 181
>Z50070-2|CAB54253.1| 1069|Caenorhabditis elegans Hypothetical protein
F43G6.1b protein.
Length = 1069
Score = 28.7 bits (61), Expect = 8.2
Identities = 12/50 (24%), Positives = 26/50 (52%)
Query: 203 ILEPEPVDINTIRGLTSKQSALRPGGEQWSGEATRNQGMLVEETRVDVTI 252
IL + +++NTI ++ + W+ +T+ +L +E RV+V +
Sbjct: 981 ILNSDELEVNTIDSYQGREKRVIIWSLTWTNNSTKKSELLKDERRVNVAL 1030
>Z50070-1|CAA90399.1| 1105|Caenorhabditis elegans Hypothetical protein
F43G6.1a protein.
Length = 1105
Score = 28.7 bits (61), Expect = 8.2
Identities = 12/50 (24%), Positives = 26/50 (52%)
Query: 203 ILEPEPVDINTIRGLTSKQSALRPGGEQWSGEATRNQGMLVEETRVDVTI 252
IL + +++NTI ++ + W+ +T+ +L +E RV+V +
Sbjct: 1017 ILNSDELEVNTIDSYQGREKRVIIWSLTWTNNSTKKSELLKDERRVNVAL 1066
>U23454-8|AAC46522.2| 249|Caenorhabditis elegans Hypothetical
protein C10A4.8 protein.
Length = 249
Score = 28.7 bits (61), Expect = 8.2
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 93 FINYKTFVNVVKYKLDLMRKR------LETEERDATSRASFKCPACGKTFT---DLEADQ 143
++++ N+ KY+ D+ K L T +R T FKC CG+ F +L +
Sbjct: 156 YVDHSQKGNLKKYRCDVCDKTFSRSNTLITHKRIHTGEKPFKCEHCGRAFRQPGNLTRHR 215
Query: 144 LYDMATQEFQCTFC 157
L + + C C
Sbjct: 216 LTHTTVKPYVCGLC 229
>L14429-7|AAK93871.1| 285|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 5 protein.
Length = 285
Score = 28.7 bits (61), Expect = 8.2
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 107 LDLMRKRLETEERDATSRASFKCPACGKTFTDLEADQLYDMATQEFQCTFCSAVVDEDMS 166
LD+ +KR E E SRA + C + + L+ M+ CT VV E
Sbjct: 132 LDVGKKRAEKERDIQPSRAEWVCANAEQMPFESNTYDLFTMSFGIRNCTHPEKVVREAFR 191
Query: 167 ALPKKDSRLLLAKFNE 182
L K +L + +F+E
Sbjct: 192 VL-KPGGQLAILEFSE 206
>AC024777-3|AAF60562.3| 563|Caenorhabditis elegans Hypothetical
protein Y42H9AR.3 protein.
Length = 563
Score = 28.7 bits (61), Expect = 8.2
Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 14/143 (9%)
Query: 67 KNDKFIQVRLKMETGLDGKAQKVNYYFINYKTFVNV-VKYKLDLMRKRLETEERDATSRA 125
K +F+ R E ++ A + N I +N K K + RK E E A
Sbjct: 124 KTREFLSTR---ELNINEVAVRTNMLIIRLDRLINGGPKDKDPVKRKEFEREVVPWLDDA 180
Query: 126 -SFKCPACGKTFTDLEADQLYDMATQEFQCTFCSAVVDEDMSALPKKDSRLLLAKFNEQL 184
+ CP C F + + C C V+ S D+ L + L
Sbjct: 181 EAVCCPLCASRF---------GLTRRRHHCRLCGRVLCHSCSKFLSFDTAKTLTSSSNPL 231
Query: 185 ETLYILLREVEGIKLAPEILEPE 207
+I++ E ++ E+L+PE
Sbjct: 232 GDTHIIVEEPNTVENEQELLQPE 254
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.315 0.132 0.368
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,137,627
Number of Sequences: 27539
Number of extensions: 354844
Number of successful extensions: 1087
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1071
Number of HSP's gapped (non-prelim): 33
length of query: 421
length of database: 12,573,161
effective HSP length: 83
effective length of query: 338
effective length of database: 10,287,424
effective search space: 3477149312
effective search space used: 3477149312
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -