Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000354-TA|BGIBMGA000354-PA|IPR000024|Frizzled CRD
region, IPR000001|Kringle, IPR001245|Tyrosine protein kinase,
IPR011009|Protein kinase-like, IPR013806|Kringle-like fold,
IPR000719|Protein kinase, IPR008266|Tyrosine protein kinase, active
site, IPR001400|Somatotropin hormone
         (638 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...   167   2e-43
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    24   3.7  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    24   3.7  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   4.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   8.5  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   8.5  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score =  167 bits (407), Expect = 2e-43
 Identities = 120/372 (32%), Positives = 180/372 (48%), Gaps = 29/372 (7%)

Query: 283 VLAIAG-IALLCHYIVKNHYS-KCNVSSRRNLQNMDIDLDKLPSNLAYHTTGAQLNPKL- 339
           VL IA  IA L   +  N+Y  K      R      +D +KLP +   +     + P + 
Sbjct: 383 VLIIAPLIATLIATVTVNYYRHKQKRRDERERYFKGLDEEKLPES-GENIEINLIKPDIF 441

Query: 340 EKLEFPRNNIIYIRDLGQGAFGRVFQAKAPGLIPDEEFTLVAVKMLKDEASHDLQLDFER 399
           ++ E     + +   +G+GAFG V +A     + ++  T VAVKMLK+  + +    F +
Sbjct: 442 DQWELGPLKLSFQGVIGEGAFGIVRRAFLD--LKEDNKTQVAVKMLKESPTSEEIRQFTQ 499

Query: 400 EACLLADF-DHPNIVKLLGVCAIGRPM--CLLFEYMGKGDLNEYLRAC-----STVTSFA 451
           E  ++     HP IV L+G    GR     L+ EY  +GDL  YLR       +    FA
Sbjct: 500 EINIMKSVRQHPYIVSLIGCVTEGRAEGPLLVVEYCSRGDLQTYLRTAWDKFTNMQQQFA 559

Query: 452 PVEHREXXXXXXXXXXXXXXX---------------XIARQIASGMLYLSDRKFVHRDLA 496
            ++                                  IARQ+A GM +L+  + VHRDLA
Sbjct: 560 YIDESSNSSNYFANKTYDFHNMSFENDFIIQPKHLLSIARQVALGMEHLAKTRVVHRDLA 619

Query: 497 TRNCLINDDMVVKIADFGLSHKIYLQDYYKGDEHDAIPVRWMPLESILYNKYTLESDVWA 556
            RN L+ ++  VK++DFGLS  +Y  + Y  +    +PVRWM LES+ + +YT  SDVW+
Sbjct: 620 ARNVLVCENHTVKVSDFGLSRDVYQDNVYCKNGGGKLPVRWMALESLTHQRYTTYSDVWS 679

Query: 557 YGVCLWEIFSFALQPYFGMTHEEVVRFLKDENVLACPDNTPRCVYDLMKQCWNHNPSDRP 616
           +GV LWEI +    PY G+   E++ FLK  N LA P N    +Y +M  CW   P +RP
Sbjct: 680 FGVLLWEIVTLGGTPYVGVHSSELLDFLKSGNRLARPANCSPDLYAVMLNCWKECPKNRP 739

Query: 617 NFRVIYQTLDNI 628
            F  + ++L+ +
Sbjct: 740 TFTELSKSLEGL 751


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 175 YYQGVINETKAGLACQAWESQFPHQHTRPP 204
           +Y G     + G   Q WE Q  H H+  P
Sbjct: 28  WYAGYHQGAQMGPEQQMWEPQMWHHHSHMP 57


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 175 YYQGVINETKAGLACQAWESQFPHQHTRPP 204
           +Y G     + G   Q WE Q  H H+  P
Sbjct: 28  WYAGYHQGAQMGPEQQMWEPQMWHHHSHMP 57


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 155 GITDMDLDQVTTTCVKGNGRYYQGVINETKAG 186
           G+    L  V   C+KGN +++ G+  +   G
Sbjct: 174 GLDSQRLLGVAMDCLKGNAKHWTGIFQKKWRG 205


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 5/29 (17%)

Query: 607 CWNHN-----PSDRPNFRVIYQTLDNIQL 630
           CW  N      SD+PNF  + Q +  ++L
Sbjct: 761 CWQSNCKKGASSDKPNFTKLIQVVPTMEL 789


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 330 TTGAQLNPKLEKLEFPRNNIIYIRDLGQ 357
           +TG   + KL K+E  R  + YIR L Q
Sbjct: 126 STGRGASKKLSKVETLRLAVEYIRSLKQ 153


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.139    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,908
Number of Sequences: 317
Number of extensions: 7255
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 8
length of query: 638
length of database: 114,650
effective HSP length: 61
effective length of query: 577
effective length of database: 95,313
effective search space: 54995601
effective search space used: 54995601
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)