Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000353-TA|BGIBMGA000353-PA|IPR000757|Glycoside
hydrolase, family 16, IPR008985|Concanavalin A-like lectin/glucanase
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    31   0.35 
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma...    29   1.4  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    28   1.9  
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    28   2.5  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    27   5.7  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   10.0 
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    26   10.0 

>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 30.7 bits (66), Expect = 0.35
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 5/33 (15%)

Query: 161 MPSGDWLWPAIWLMPAYNKYGTWPASGEIDLVE 193
           +P G   WPA W +        WP  GEID+VE
Sbjct: 215 LPYGCGTWPAFWTLG-----DDWPNGGEIDIVE 242


>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 434

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 295 SKMAPFDQKFYLIINLAVG-GTNGFFPDGVKNPIPKPWW 332
           +K    +Q F   +N+ V     G+  +G+ NP PKP W
Sbjct: 21  TKTIYLNQSFQAPMNMLVSTALQGYINEGLYNPHPKPMW 59


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 130 PTNILNPIKSARIRTVHSFSFQYGKVEVRAKMPSGDWL 167
           P N  +P+K   I+  H +  Q G  EV ++ P+G+ L
Sbjct: 80  PENDNSPLKHTHIQFAHCYKNQEGWREVLSRFPAGNGL 117


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 6   LGVVALISASKACTPSVTTVSGTHAPVTVCSGQLIFADD--FVDFDLEKWQHENTLAGGG 63
           L + A +S +     ++  V  T  P+ V       ADD  F     E W H+ +L   G
Sbjct: 48  LALQADVSKADQIETAIEKVIQTLGPIDVLINNAGLADDTPFEQLSHESWDHDVSLVLRG 107

Query: 64  NWEFQYY 70
           N+  Q Y
Sbjct: 108 NYLTQRY 114


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/57 (22%), Positives = 31/57 (54%)

Query: 13  SASKACTPSVTTVSGTHAPVTVCSGQLIFADDFVDFDLEKWQHENTLAGGGNWEFQY 69
           S+S + +P+ ++VSG      +    L ++D+FV+  +  + +  + + G +  F+Y
Sbjct: 281 SSSASASPTSSSVSGKRGLAWIPGTDLGYSDNFVNKGINWYYNWGSYSSGLSSSFEY 337


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 10.0
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 141 RIRTVHSFSFQYGKVEVRAKMPSGDWLWPAIWLMPAYNKYGTWPASGEIDL 191
           ++ ++   S  + K+ +R  +  GD L  A  +  A   Y T PA+G+I L
Sbjct: 774 QLESMIRLSEAHAKMHLRNVVEVGDVLEAARLIKTAIKDYATDPATGKISL 824


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.8 bits (54), Expect = 10.0
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)

Query: 39  LIFADDFVDFDLEKWQHENTLAGGGNWE 66
           +IF  DFVD DL+  QH+      G+WE
Sbjct: 292 MIFQFDFVDLDLDPNQHKYI---EGSWE 316


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.139    0.474 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,936,855
Number of Sequences: 5004
Number of extensions: 89378
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 125
Number of HSP's gapped (non-prelim): 10
length of query: 375
length of database: 2,362,478
effective HSP length: 74
effective length of query: 301
effective length of database: 1,992,182
effective search space: 599646782
effective search space used: 599646782
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)