Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000353-TA|BGIBMGA000353-PA|IPR000757|Glycoside
hydrolase, family 16, IPR008985|Concanavalin A-like lectin/glucanase
         (375 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39311| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_18555| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_17842| Best HMM Match : RVT_1 (HMM E-Value=2.2e-29)                 29   6.2  
SB_39948| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_11948| Best HMM Match : rve (HMM E-Value=5.3e-11)                   29   6.2  
SB_7231| Best HMM Match : Connexin43 (HMM E-Value=6.4)                 29   6.2  
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   8.2  

>SB_39311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 916

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 189 IDLVESRGNKNMFLNGLHIGTQEAGSTLHYGPF-PGLSGWEKAHWVRR-NSAGYD 241
           + L + R  KN   N   +G  + G T+   PF  G   WEK   VRR +   YD
Sbjct: 472 LKLEQQRQCKNYNKNAKDLGILQEGDTIRLKPFRKGNKKWEKGVVVRRLDERSYD 526


>SB_18555| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 243 NFHRYQLEWTPDFISFRIDDSEI 265
           NF   QL WTP F+SF    +EI
Sbjct: 104 NFVAIQLSWTPSFLSFHPTKAEI 126


>SB_17842| Best HMM Match : RVT_1 (HMM E-Value=2.2e-29)
          Length = 1167

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 189  IDLVESRGNKNMFLNGLHIGTQEAGSTLHYGPF-PGLSGWEKAHWVRR-NSAGYD 241
            + L + R  KN   N   +G  + G T+   PF  G   WEK   VRR +   YD
Sbjct: 1023 LKLEQQRQCKNYNKNAKDLGILQEGDTIRLKPFRKGNKKWEKGVVVRRLDERSYD 1077


>SB_39948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 189 IDLVESRGNKNMFLNGLHIGTQEAGSTLHYGPF-PGLSGWEKAHWVRR-NSAGYD 241
           + L + R  KN   N   +G  + G T+   PF  G   WEK   VRR +   YD
Sbjct: 583 LKLEQQRQCKNYNKNAKDLGILQEGDTIRLKPFRKGNKKWEKGVVVRRLDERSYD 637


>SB_11948| Best HMM Match : rve (HMM E-Value=5.3e-11)
          Length = 418

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 189 IDLVESRGNKNMFLNGLHIGTQEAGSTLHYGPF-PGLSGWEKAHWVRR-NSAGYD 241
           + L + R  KN   N   +G  + G T+   PF  G   WEK   VRR +   YD
Sbjct: 297 LKLEQQRQCKNYNKNAKDLGILQEGDTIRLKPFRKGNKKWEKGVVVRRLDERSYD 351


>SB_7231| Best HMM Match : Connexin43 (HMM E-Value=6.4)
          Length = 148

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 189 IDLVESRGNKNMFLNGLHIGTQEAGSTLHYGPF-PGLSGWEKAHWVRR-NSAGYD 241
           + L + R  KN   N   +G  + G T+   PF  G   WEK   VRR +   YD
Sbjct: 11  LKLEQQRQCKNYNKNAKDLGILQEGDTIRLKPFRKGNKKWEKGVVVRRLDERSYD 65


>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1221

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 266 GRVTPGNGGFWEYGGFNNR------PGIHNPWRYGSKMAPFDQKFYLIINLAVGGTNGFF 319
           GR+ P + G   Y  +N         G + P +YGS+  P  Q      + + G    ++
Sbjct: 148 GRIPPASPGIDNYPSYNQNGSYMAGAGANLP-QYGSQSRPIGQHASQYSSSSTGFGGSYY 206

Query: 320 PDGVKNPIPK 329
           PDG +   PK
Sbjct: 207 PDGYQAMPPK 216


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.139    0.474 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,285,680
Number of Sequences: 59808
Number of extensions: 645607
Number of successful extensions: 846
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 845
Number of HSP's gapped (non-prelim): 7
length of query: 375
length of database: 16,821,457
effective HSP length: 83
effective length of query: 292
effective length of database: 11,857,393
effective search space: 3462358756
effective search space used: 3462358756
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)