Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000353-TA|BGIBMGA000353-PA|IPR000757|Glycoside
hydrolase, family 16, IPR008985|Concanavalin A-like lectin/glucanase
         (375 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25415.1 68418.m03015 hypothetical protein several hypothetic...    32   0.54 
At1g32170.1 68414.m03957 xyloglucan:xyloglucosyl transferase, pu...    31   1.3  
At4g18990.1 68417.m02797 xyloglucan:xyloglucosyl transferase, pu...    31   1.7  
At3g17240.3 68416.m02203 dihydrolipoamide dehydrogenase 2, mitoc...    29   3.8  
At3g17240.2 68416.m02204 dihydrolipoamide dehydrogenase 2, mitoc...    29   3.8  
At3g17240.1 68416.m02202 dihydrolipoamide dehydrogenase 2, mitoc...    29   3.8  
At3g23730.1 68416.m02984 xyloglucan:xyloglucosyl transferase, pu...    29   5.1  
At4g30270.1 68417.m04303 MERI-5 protein (MERI-5) (MERI5B) / endo...    28   8.8  
At3g48580.1 68416.m05304 xyloglucan:xyloglucosyl transferase, pu...    28   8.8  

>At5g25415.1 68418.m03015 hypothetical protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 334

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 17/85 (20%)

Query: 210 QEAGSTLHYGPFPGLSGWEKAHWVRRNSAGYDTNFHRYQLEWTPDFISFRIDDS----EI 265
           Q AG     GP+ G+  W           GY  N  RYQ+ +T  FI  R+++     + 
Sbjct: 88  QIAGVRSRAGPYHGVEAWFN---------GYKLNVGRYQISYTQIFIGSRLNNQDNFIQA 138

Query: 266 GR-VTP---GNGGFWEYGGFNNRPG 286
           G  + P   G G  W YG +  + G
Sbjct: 139 GYIINPGFFGTGQLWTYGFWKGKDG 163


>At1g32170.1 68414.m03957 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative (XTR4) identical
           to N-terminal partial sequence of xyloglucan
           endotransglycosylase-related protein XTR4 GI:1244754
           from [Arabidopsis thaliana]; similar to endoxyloglucan
           transferase [Arabidopsis thaliana] GI:5533311
          Length = 343

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 244 FHRYQLEWTPDFISFRIDDSEIGRV 268
           FHRY + WTP  I F +DD  I  V
Sbjct: 153 FHRYSILWTPHKIIFWVDDVPIREV 177


>At4g18990.1 68417.m02797 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase-related protein XTR4
           GI:1244754 from [Arabidopsis thaliana]
          Length = 357

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 244 FHRYQLEWTPDFISFRIDDSEIGRV 268
           FHRY + WTP  I F +DD  I  +
Sbjct: 161 FHRYSILWTPTKIIFWVDDVPIREI 185


>At3g17240.3 68416.m02203 dihydrolipoamide dehydrogenase 2,
           mitochondrial / lipoamide dehydrogenase 2 (MTLPD2)
           nearly identical to GB:AAF34796 [gi:6984216] from
           [Arabidopsis thaliana]; alternative splice form exists
          Length = 507

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 229 KAHWVRRNSAGYDTNFHRYQLEWTPDFISFRIDDSEIGRVTPGNGGF 275
           KA+++ RN +   T+  R+    T  F S   DD+++  +  G GG+
Sbjct: 10  KAYFLTRNISNSPTDAFRFSFSLTRGFASSGSDDNDVVIIGGGPGGY 56


>At3g17240.2 68416.m02204 dihydrolipoamide dehydrogenase 2,
           mitochondrial / lipoamide dehydrogenase 2 (MTLPD2)
           nearly identical to GB:AAF34796 [gi:6984216] from
           [Arabidopsis thaliana]; alternative splice form exists
          Length = 127

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 229 KAHWVRRNSAGYDTNFHRYQLEWTPDFISFRIDDSEIGRVTPGNGGF 275
           KA+++ RN +   T+  R+    T  F S   DD+++  +  G GG+
Sbjct: 10  KAYFLTRNISNSPTDAFRFSFSLTRGFASSGSDDNDVVIIGGGPGGY 56


>At3g17240.1 68416.m02202 dihydrolipoamide dehydrogenase 2,
           mitochondrial / lipoamide dehydrogenase 2 (MTLPD2)
           nearly identical to GB:AAF34796 [gi:6984216] from
           [Arabidopsis thaliana]; alternative splice form exists
          Length = 507

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 229 KAHWVRRNSAGYDTNFHRYQLEWTPDFISFRIDDSEIGRVTPGNGGF 275
           KA+++ RN +   T+  R+    T  F S   DD+++  +  G GG+
Sbjct: 10  KAYFLTRNISNSPTDAFRFSFSLTRGFASSGSDDNDVVIIGGGPGGY 56


>At3g23730.1 68416.m02984 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           xyloglucan endotransglycosylase-related protein
           GI:1244760 from [Arabidopsis thaliana]
          Length = 291

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 243 NFHRYQLEWTPDFISFRIDDSEI 265
           NFH Y L W P  I F +D+  I
Sbjct: 142 NFHTYSLVWRPQHIIFMVDNVPI 164


>At4g30270.1 68417.m04303 MERI-5 protein (MERI-5) (MERI5B) /
           endo-xyloglucan transferase / xyloglucan
           endo-1,4-beta-D-glucanase (SEN4) identical to
           endo-xyloglucan transferase gi:944810, SP|P24806 MERI-5
           protein precursor (Endo-xyloglucan transferase)
           (Xyloglucan endo-1,4-beta-D-glucanase) {Arabidopsis
           thaliana}
          Length = 269

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 243 NFHRYQLEWTPDFISFRIDDSEI 265
           NFH Y + W P  I   +DD+ I
Sbjct: 139 NFHTYSILWNPQRIILTVDDTPI 161


>At3g48580.1 68416.m05304 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           endoxyloglucan transferase EXGT-A4 GI:5139002 from
           [Arabidopsis thaliana]
          Length = 277

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 8/102 (7%)

Query: 243 NFHRYQLEWTPDFISFRIDDSEIGRVTPGNGGFWEYGGFNN---RPGIHNPWRYGSKMAP 299
           ++H Y   W P+ + F +DD+ I RV   N   + Y           + N      K  P
Sbjct: 147 DYHSYSFLWNPNQLVFYVDDTPI-RVYSKNPDVY-YPSVQTMFLMGSVQNGSIIDPKQMP 204

Query: 300 FDQKFYLIINLAVGGTNGFFPDGVKNPIPKPWWNNSPMAATD 341
           +  KF       + G    F    K   PK WWN   +++ +
Sbjct: 205 YIAKFQA---SKIEGCKTEFMGIDKCTDPKFWWNRKQLSSKE 243


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.139    0.474 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,321,650
Number of Sequences: 28952
Number of extensions: 487272
Number of successful extensions: 783
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 776
Number of HSP's gapped (non-prelim): 9
length of query: 375
length of database: 12,070,560
effective HSP length: 82
effective length of query: 293
effective length of database: 9,696,496
effective search space: 2841073328
effective search space used: 2841073328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)