Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000353-TA|BGIBMGA000353-PA|IPR000757|Glycoside
hydrolase, family 16, IPR008985|Concanavalin A-like lectin/glucanase
(375 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1275 - 35395228-35395642,35396682-35397250 34 0.21
02_05_0397 + 28641033-28641231,28641385-28641485,28642012-286420... 33 0.49
07_03_0376 + 17437308-17437536,17438049-17438149,17438246-174384... 32 0.86
03_01_0056 - 471338-471919,472013-472213 32 0.86
10_08_0818 + 20801061-20801298,20801409-20801509,20801600-208018... 30 2.6
04_03_0690 + 18751601-18753667 30 2.6
03_02_0309 - 7307241-7307715,7309383-7309591,7309730-7309830,730... 30 2.6
06_03_0642 + 23084397-23084909,23084990-23085123,23085618-230857... 30 3.5
06_01_0753 + 5640233-5640253,5641687-5642499 30 3.5
02_01_0220 + 1444219-1444414,1444535-1444635,1445449-1446174 30 3.5
01_07_0107 - 41118897-41120036 29 8.0
>02_05_1275 - 35395228-35395642,35396682-35397250
Length = 327
Score = 33.9 bits (74), Expect = 0.21
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 243 NFHRYQLEWTPDFISFRIDDSEIGRVTPGNGGFWEYGGFNNRPGIHNPWRYGS 295
+FH Y + WT D I F +DD I R + G GF RP W YGS
Sbjct: 176 DFHHYAILWTSDHIIFLVDDVPIRRYGRRSAG--GAAGFPARP----MWVYGS 222
>02_05_0397 +
28641033-28641231,28641385-28641485,28642012-28642068,
28642087-28642295,28642378-28642924
Length = 370
Score = 32.7 bits (71), Expect = 0.49
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 245 HRYQLEWTPDFISFRIDDSEIGRVT--PGNGG 274
HRY + W P I F IDD+ I V PG GG
Sbjct: 177 HRYSVLWAPTHIIFYIDDTPIREVIRHPGMGG 208
>07_03_0376 +
17437308-17437536,17438049-17438149,17438246-17438463,
17438544-17438901
Length = 301
Score = 31.9 bits (69), Expect = 0.86
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 243 NFHRYQLEWTPDFISFRIDDSEIGR 267
+FH Y + W PD I+F +DD I R
Sbjct: 169 DFHHYAILWNPDAITFFVDDVPIRR 193
>03_01_0056 - 471338-471919,472013-472213
Length = 260
Score = 31.9 bits (69), Expect = 0.86
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 243 NFHRYQLEWTPDFISFRIDDSEIGRVTPGNGG------FWEYG 279
+FH Y + W PD I F +DD + R G W YG
Sbjct: 126 DFHHYAILWNPDHIVFLVDDVPVRRYPRAAGNTFPDRQMWAYG 168
>10_08_0818 +
20801061-20801298,20801409-20801509,20801600-20801817,
20802461-20802824
Length = 306
Score = 30.3 bits (65), Expect = 2.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 244 FHRYQLEWTPDFISFRIDDSEIGR 267
FH Y + W PD I F +DD I R
Sbjct: 173 FHHYAILWNPDQILFLVDDVPIRR 196
>04_03_0690 + 18751601-18753667
Length = 688
Score = 30.3 bits (65), Expect = 2.6
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 231 HWVRRNSAGYDTNFHRY-QLEWTPDFISFRIDDSEIGRVTPGNG 273
HW+RR N Y ++ WT +SF DD+ GR G+G
Sbjct: 546 HWIRRRRGKIRQNSKNYLRISWT-KVLSFLKDDAHGGRSGSGSG 588
>03_02_0309 -
7307241-7307715,7309383-7309591,7309730-7309830,
7309918-7310149
Length = 338
Score = 30.3 bits (65), Expect = 2.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 243 NFHRYQLEWTPDFISFRIDDSEIGRV 268
+FHRY + W+ D I F +D++ I V
Sbjct: 167 DFHRYAIRWSHDTIIFYVDETPIREV 192
>06_03_0642 +
23084397-23084909,23084990-23085123,23085618-23085731,
23085929-23086112,23086212-23086280,23087319-23087576
Length = 423
Score = 29.9 bits (64), Expect = 3.5
Identities = 30/153 (19%), Positives = 50/153 (32%), Gaps = 10/153 (6%)
Query: 87 RPSLTSDQFG-SAFLHSGRLNIEGGAPADRCTNPQWYGCERVGTPTNILNPIKSARIRTV 145
RP + +D FG +H G + + + G +R + ++N ++ + V
Sbjct: 124 RPDMLTDTFGFGRMIHEGLMFRQNFS-----IRSYEIGADRTASIETLMNHLQETALNHV 178
Query: 146 HSFSFQYGKVEVRAKMPSGDWLWPAIWLMPAYNKYGTWPASGEIDLVESRGNKNMFLNGL 205
S +M D W + +Y W + E+D KN
Sbjct: 179 KSAGLLGDGFGSTPEMSKRDLFWVVSQMQAIVERYPCWGDTVEVDTWVGAHGKNGMRRDW 238
Query: 206 HIGTQEAGSTLHYGPFPGLSGWEKAHWVRRNSA 238
HI G T+ S W H + R A
Sbjct: 239 HIRDSVTGHTI----LKATSKWVMMHKLTRRLA 267
>06_01_0753 + 5640233-5640253,5641687-5642499
Length = 277
Score = 29.9 bits (64), Expect = 3.5
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 13 SASKACTPSVTTVSGTHAPVTVCSGQLIFADDFVDFDL 50
SAS+A TP+ ++ G +P V S + + +D VD+ L
Sbjct: 183 SASEASTPACSSSDGAASPSPVSSPETVISDVDVDYSL 220
>02_01_0220 + 1444219-1444414,1444535-1444635,1445449-1446174
Length = 340
Score = 29.9 bits (64), Expect = 3.5
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 242 TNFHRYQLEWTPDFISFRIDDSEIGRV--TPGNGG 274
T FHRY + WT I F +DD I V TP G
Sbjct: 154 TEFHRYSILWTRAAIVFFVDDVPIREVRRTPAMTG 188
>01_07_0107 - 41118897-41120036
Length = 379
Score = 28.7 bits (61), Expect = 8.0
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 9 VALISASKACTPSVTTVSGTHAPVTVCSGQLIFADDFVDFDLEKWQ 54
V +S AC V + AP + G + D+ V FDLEKWQ
Sbjct: 312 VVEVSQEAACFAFVD-MGAAAAPAVIIGGHQM-EDNLVVFDLEKWQ 355
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.139 0.474
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,343,016
Number of Sequences: 37544
Number of extensions: 639369
Number of successful extensions: 1022
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1014
Number of HSP's gapped (non-prelim): 11
length of query: 375
length of database: 14,793,348
effective HSP length: 83
effective length of query: 292
effective length of database: 11,677,196
effective search space: 3409741232
effective search space used: 3409741232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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